Analysis of interatomic Contacts of Structural Units in PDB entry:
4LJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LJQ entry

There are 4 chains in PDB entry 4LJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 858ARG 1070
A
 GLN 858ARG 1070
C
 GLN 858ARG 1070
D
 GLY 859ARG 1070
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4LJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
861 866Right-handed alpha
Helix 2
2
B
930 935Right-handed alpha
Helix 3
3
B
938 949Right-handed alpha
Helix 4
4
B
998 1009Right-handed alpha
Helix 5
5
B
1011 1012Right-handed alpha
Helix 6
6
B
1016 1021Right-handed 310
Helix 7
7
B
1022 1035Right-handed alpha
Helix 8
8
B
1045 1061Right-handed alpha
Helix 9
9
A
859 865Right-handed alpha
Helix 10
10
A
917 921Right-handed 310
Helix 11
11
A
930 935Right-handed alpha
Helix 12
12
A
938 949Right-handed alpha
Helix 13
13
A
998 1013Right-handed alpha
Helix 14
14
A
1016 1021Right-handed 310
Helix 15
15
A
1022 1035Right-handed alpha
Helix 16
16
A
1045 1061Right-handed alpha
Helix 17
17
C
859 866Right-handed alpha
Helix 18
18
C
930 935Right-handed alpha
Helix 19
19
C
938 949Right-handed alpha
Helix 20
20
C
998 1013Right-handed alpha
Helix 21
21
C
1016 1021Right-handed 310
Helix 22
22
C
1022 1035Right-handed alpha
Helix 23
23
C
1045 1061Right-handed alpha
Helix 24
24
D
860 866Right-handed alpha
Helix 25
25
D
930 935Right-handed alpha
Helix 26
26
D
938 949Right-handed alpha
Helix 27
27
D
998 1013Right-handed alpha
Helix 28
28
D
1016 1021Right-handed 310
Helix 29
29
D
1022 1035Right-handed alpha
Helix 30
30
D
1045 1061Right-handed alpha
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There are 12 sheets in PDB entry 4LJQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
887 889first strand
Strand 2
B
896 898anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
905 906first strand
Strand 2
B
923 924anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
972 973first strand
Strand 2
B
984 985anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
877 878anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 889first strand
Strand 2
A
896 898anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 906first strand
Strand 2
A
923 924anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
869 870first strand
Strand 2
C
877 878anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
887 889first strand
Strand 2
C
896 898anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
905 906first strand
Strand 2
C
923 924anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
869 870first strand
Strand 2
D
877 878anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
887 889first strand
Strand 2
D
896 898anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
905 906first strand
Strand 2
D
923 924anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il