Analysis of interatomic Contacts of Structural Units in PDB entry:
4LJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LJS entry

There is 1 chain in PDB entry 4LJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 24ILE 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4LJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 77Right-handed alpha
Helix 2
2
A
79 81Right-handed 310
Helix 3
3
A
91 95Right-handed 310
Helix 4
4
A
96 98Right-handed 310
Helix 5
5
A
99 106Right-handed alpha
Helix 6
6
A
110 114Right-handed 310
Helix 7
7
A
115 123Right-handed alpha
Helix 8
8
A
130 134Right-handed 310
Helix 9
9
A
141 147Right-handed alpha
Helix 10
10
A
156 159Right-handed 310
Helix 11
11
A
166 181Right-handed alpha
Helix 12
12
A
183 205Right-handed alpha
Helix 13
13
A
230 239Right-handed alpha
Helix 14
14
A
252 260Right-handed alpha
Helix 15
15
A
270 274Right-handed 310
Helix 16
16
A
275 285Right-handed alpha
Helix 17
17
A
287 291Right-handed 310
Helix 18
18
A
292 297Right-handed alpha
Helix 19
19
A
306 308Right-handed 310
Helix 20
20
A
311 313Right-handed 310
Helix 21
21
A
314 327Right-handed alpha
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There are 4 sheets in PDB entry 4LJS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 47first strand
Strand 2
A
50 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
63 66parallel
Strand 3
A
126 129parallel
Strand 4
A
151 154parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
212 219anti-parallel
Strand 3
A
242 243parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
212 219anti-parallel
Strand 3
A
263 268parallel
Strand 4
A
300 304parallel
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