Analysis of interatomic Contacts of Structural Units in PDB entry:
4LM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LM8 entry

There is 1 chain in PDB entry 4LM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45LYS 670
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4LM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
182 189Right-handed 310
Helix 2
2
A
202 210Right-handed alpha
Helix 3
3
A
211 219Right-handed alpha
Helix 4
4
A
220 223Right-handed 310
Helix 5
5
A
224 232Right-handed alpha
Helix 6
6
A
246 254Right-handed alpha
Helix 7
7
A
256 260Right-handed 310
Helix 8
8
A
271 276Right-handed alpha
Helix 9
9
A
278 283Right-handed alpha
Helix 10
10
A
305 310Right-handed alpha
Helix 11
11
A
311 331Right-handed alpha
Helix 12
12
A
363 369Right-handed 310
Helix 13
13
A
429 432Right-handed 310
Helix 14
14
A
462 464Right-handed 310
Helix 15
15
A
492 501Right-handed alpha
Helix 16
16
A
518 522Right-handed 310
Helix 17
17
A
535 541Right-handed 310
Helix 18
18
A
555 568Right-handed alpha
Helix 19
19
A
568 573Right-handed alpha
Helix 20
20
A
575 579Right-handed 310
Helix 21
21
A
584 591Right-handed 310
Helix 22
22
A
608 616Right-handed alpha
Helix 23
23
A
628 635Right-handed alpha
Helix 24
24
A
642 649Right-handed alpha
Helix 25
25
A
654 659Right-handed alpha
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There are 8 sheets in PDB entry 4LM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
121 124anti-parallel
Strand 4
A
114 116anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 111first strand
Strand 2
A
83 92anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
161 167anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
157 158anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 341first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
361 362anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 341first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
415 418anti-parallel
Strand 4
A
407 409anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
371 380anti-parallel
Strand 4
A
434 446anti-parallel
Strand 5
A
466 468anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
434 446anti-parallel
Strand 3
A
472 477anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 598first strand
Strand 2
A
604 607anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il