Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4LMF entry

There are 4 chains in PDB entry 4LMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	MET 277
B	PRO 2	MET 277
C	PRO 2	MET 277
D	PRO 2	MET 277

There are 8 helices in PDB entry 4LMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	47	51	Right-handed 310
Helix 2	2	A	204	206	Right-handed 310
Helix 3	3	B	47	51	Right-handed 310
Helix 4	4	B	204	206	Right-handed 310
Helix 5	5	C	47	51	Right-handed 310
Helix 6	6	C	204	206	Right-handed 310
Helix 7	7	D	47	51	Right-handed 310
Helix 8	8	D	204	206	Right-handed 310

There are 30 sheets in PDB entry 4LMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	107	116	anti-parallel
Strand 3	A	33	44	anti-parallel
Strand 4	A	69	71	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	107	116	anti-parallel
Strand 3	A	33	44	anti-parallel
Strand 4	A	82	86	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	28	first strand
Strand 2	A	90	97	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	138	142	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	156	158	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	186	192	parallel
Strand 3	A	252	258	anti-parallel
Strand 4	A	222	227	anti-parallel
Strand 5	A	230	235	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	197	202	anti-parallel
Strand 4	A	245	247	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	107	116	anti-parallel
Strand 3	B	33	44	anti-parallel
Strand 4	B	69	71	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	107	116	anti-parallel
Strand 3	B	33	44	anti-parallel
Strand 4	B	82	86	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	28	first strand
Strand 2	B	90	96	anti-parallel
Strand 3	B	54	59	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	138	142	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	156	158	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	186	192	parallel
Strand 3	B	252	258	anti-parallel
Strand 4	B	222	227	anti-parallel
Strand 5	B	230	235	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	267	276	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	267	276	anti-parallel
Strand 3	B	197	202	anti-parallel
Strand 4	B	245	247	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	107	116	anti-parallel
Strand 3	C	33	43	anti-parallel
Strand 4	C	82	86	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	28	first strand
Strand 2	C	90	97	anti-parallel
Strand 3	C	54	59	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	138	142	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	156	157	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	186	192	parallel
Strand 3	C	252	258	anti-parallel
Strand 4	C	222	227	anti-parallel
Strand 5	C	230	235	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	267	276	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	267	276	anti-parallel
Strand 3	C	197	202	anti-parallel
Strand 4	C	245	247	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	107	116	anti-parallel
Strand 3	D	33	43	anti-parallel
Strand 4	D	82	86	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	28	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	54	59	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	138	142	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	149	first strand
Strand 2	D	156	158	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	186	192	parallel
Strand 3	D	252	258	anti-parallel
Strand 4	D	222	227	anti-parallel
Strand 5	D	230	235	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	267	276	anti-parallel
Strand 3	D	208	209	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	267	276	anti-parallel
Strand 3	D	197	202	anti-parallel
Strand 4	D	245	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4LMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMF