Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4LMH entry

There are 4 chains in PDB entry 4LMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 43	ASN 735
B	VAL 43	LYS 736
C	GLY 44	ASN 735
D	VAL 43	GLY 737

There are 99 helices in PDB entry 4LMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	149	151	Right-handed 310
Helix 2	2	A	224	229	Right-handed alpha
Helix 3	3	A	233	238	Right-handed alpha
Helix 4	4	A	246	254	Right-handed alpha
Helix 5	5	A	268	279	Right-handed alpha
Helix 6	6	A	301	303	Right-handed 310
Helix 7	7	A	309	311	Right-handed 310
Helix 8	8	A	320	324	Right-handed 310
Helix 9	9	A	334	340	Right-handed 310
Helix 10	10	A	344	352	Right-handed alpha
Helix 11	11	A	363	368	Right-handed alpha
Helix 12	12	A	379	395	Right-handed alpha
Helix 13	13	A	426	430	Right-handed 310
Helix 14	14	A	562	571	Right-handed alpha
Helix 15	15	A	582	586	Right-handed 310
Helix 16	16	A	607	615	Right-handed alpha
Helix 17	17	A	616	619	Right-handed 310
Helix 18	18	A	634	638	Right-handed 310
Helix 19	19	A	647	651	Right-handed 310
Helix 20	20	A	675	686	Right-handed alpha
Helix 21	21	A	690	700	Right-handed alpha
Helix 22	22	A	708	716	Right-handed alpha
Helix 23	23	A	719	724	Right-handed alpha
Helix 24	24	A	725	733	Right-handed alpha
Helix 25	25	B	48	50	Right-handed 310
Helix 26	26	B	149	151	Right-handed 310
Helix 27	27	B	224	229	Right-handed alpha
Helix 28	28	B	233	238	Right-handed 310
Helix 29	29	B	239	243	Right-handed 310
Helix 30	30	B	246	252	Right-handed alpha
Helix 31	31	B	268	279	Right-handed alpha
Helix 32	32	B	301	303	Right-handed 310
Helix 33	33	B	309	311	Right-handed 310
Helix 34	34	B	320	324	Right-handed 310
Helix 35	35	B	334	340	Right-handed 310
Helix 36	36	B	343	352	Right-handed alpha
Helix 37	37	B	363	368	Right-handed alpha
Helix 38	38	B	379	395	Right-handed alpha
Helix 39	39	B	426	430	Right-handed 310
Helix 40	40	B	562	571	Right-handed alpha
Helix 41	41	B	582	586	Right-handed 310
Helix 42	42	B	607	614	Right-handed alpha
Helix 43	43	B	615	619	Right-handed 310
Helix 44	44	B	634	638	Right-handed 310
Helix 45	45	B	647	651	Right-handed 310
Helix 46	46	B	676	686	Right-handed alpha
Helix 47	47	B	690	700	Right-handed alpha
Helix 48	48	B	708	716	Right-handed alpha
Helix 49	49	B	719	723	Right-handed 310
Helix 50	50	B	725	733	Right-handed alpha
Helix 51	51	C	149	151	Right-handed 310
Helix 52	52	C	224	229	Right-handed alpha
Helix 53	53	C	233	238	Right-handed 310
Helix 54	54	C	246	254	Right-handed alpha
Helix 55	55	C	268	279	Right-handed alpha
Helix 56	56	C	301	303	Right-handed 310
Helix 57	57	C	309	311	Right-handed 310
Helix 58	58	C	320	324	Right-handed 310
Helix 59	59	C	334	340	Right-handed 310
Helix 60	60	C	344	352	Right-handed alpha
Helix 61	61	C	363	368	Right-handed alpha
Helix 62	62	C	379	395	Right-handed alpha
Helix 63	63	C	426	430	Right-handed 310
Helix 64	64	C	562	571	Right-handed alpha
Helix 65	65	C	582	586	Right-handed 310
Helix 66	66	C	607	614	Right-handed alpha
Helix 67	67	C	615	619	Right-handed 310
Helix 68	68	C	634	638	Right-handed 310
Helix 69	69	C	647	651	Right-handed 310
Helix 70	70	C	676	686	Right-handed alpha
Helix 71	71	C	690	699	Right-handed alpha
Helix 72	72	C	708	716	Right-handed alpha
Helix 73	73	C	719	724	Right-handed alpha
Helix 74	74	C	725	733	Right-handed alpha
Helix 75	75	D	48	50	Right-handed 310
Helix 76	76	D	149	151	Right-handed 310
Helix 77	77	D	224	229	Right-handed alpha
Helix 78	78	D	233	238	Right-handed 310
Helix 79	79	D	239	243	Right-handed 310
Helix 80	80	D	246	254	Right-handed alpha
Helix 81	81	D	268	279	Right-handed alpha
Helix 82	82	D	301	303	Right-handed 310
Helix 83	83	D	309	311	Right-handed 310
Helix 84	84	D	320	324	Right-handed 310
Helix 85	85	D	334	340	Right-handed 310
Helix 86	86	D	344	352	Right-handed alpha
Helix 87	87	D	363	368	Right-handed alpha
Helix 88	88	D	379	395	Right-handed alpha
Helix 89	89	D	426	430	Right-handed 310
Helix 90	90	D	562	571	Right-handed alpha
Helix 91	91	D	582	586	Right-handed 310
Helix 92	92	D	607	615	Right-handed alpha
Helix 93	93	D	616	619	Right-handed 310
Helix 94	94	D	634	638	Right-handed 310
Helix 95	95	D	647	651	Right-handed 310
Helix 96	96	D	675	686	Right-handed alpha
Helix 97	97	D	690	700	Right-handed alpha
Helix 98	98	D	708	716	Right-handed alpha
Helix 99	99	D	725	733	Right-handed alpha

There are 49 sheets in PDB entry 4LMH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	81	82	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	63	first strand
Strand 2	A	66	74	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	155	157	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	117	first strand
Strand 2	A	89	103	anti-parallel
Strand 3	A	146	147	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	117	first strand
Strand 2	A	89	103	anti-parallel
Strand 3	A	187	195	anti-parallel
Strand 4	A	200	207	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	140	143	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	291	293	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	305	307	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	407	first strand
Strand 2	A	410	418	anti-parallel
Strand 3	A	481	485	anti-parallel
Strand 4	A	473	476	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	501	507	anti-parallel
Strand 4	A	541	544	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	512	first strand
Strand 2	A	532	535	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	603	604	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	664	first strand
Strand 2	A	670	674	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	81	82	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	63	first strand
Strand 2	B	66	74	anti-parallel
Strand 3	B	162	166	anti-parallel
Strand 4	B	155	157	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	117	first strand
Strand 2	B	89	104	anti-parallel
Strand 3	B	146	147	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	117	first strand
Strand 2	B	89	104	anti-parallel
Strand 3	B	187	195	anti-parallel
Strand 4	B	200	207	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	140	143	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	180	181	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	291	293	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	305	307	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	407	first strand
Strand 2	B	410	418	anti-parallel
Strand 3	B	481	485	anti-parallel
Strand 4	B	473	476	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	B	440	444	anti-parallel
Strand 3	B	501	507	anti-parallel
Strand 4	B	541	544	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	512	first strand
Strand 2	B	532	535	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	603	604	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	664	first strand
Strand 2	B	670	675	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	81	82	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	63	first strand
Strand 2	C	66	74	anti-parallel
Strand 3	C	162	166	anti-parallel
Strand 4	C	155	157	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	117	first strand
Strand 2	C	89	104	anti-parallel
Strand 3	C	146	147	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	117	first strand
Strand 2	C	89	104	anti-parallel
Strand 3	C	188	195	anti-parallel
Strand 4	C	200	207	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	140	143	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	291	293	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	299	first strand
Strand 2	C	305	307	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	407	first strand
Strand 2	C	410	418	anti-parallel
Strand 3	C	481	485	anti-parallel
Strand 4	C	473	476	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	466	first strand
Strand 2	C	440	445	anti-parallel
Strand 3	C	501	507	anti-parallel
Strand 4	C	541	544	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	512	first strand
Strand 2	C	532	535	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	595	first strand
Strand 2	C	603	604	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	664	first strand
Strand 2	C	670	675	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	81	82	parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	63	first strand
Strand 2	D	66	74	anti-parallel
Strand 3	D	162	166	anti-parallel
Strand 4	D	155	157	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	117	first strand
Strand 2	D	89	104	anti-parallel
Strand 3	D	146	147	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	117	first strand
Strand 2	D	89	104	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	200	207	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	140	143	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	291	293	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	299	first strand
Strand 2	D	305	307	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	406	first strand
Strand 2	D	411	418	anti-parallel
Strand 3	D	481	485	anti-parallel
Strand 4	D	473	476	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	466	first strand
Strand 2	D	440	444	anti-parallel
Strand 3	D	501	507	anti-parallel
Strand 4	D	541	544	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	512	first strand
Strand 2	D	532	535	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	595	first strand
Strand 2	D	603	604	anti-parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	660	663	first strand
Strand 2	D	671	674	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4LMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMH