Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4LMJ entry

There are 5 chains in PDB entry 4LMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PRO 7	PHE 316
B	PRO 7	PHE 316
C	PRO 7	PHE 316
A	PRO 7	PHE 316
D	PRO 7	PHE 316

There are 50 helices in PDB entry 4LMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	E	49	52	Right-handed 310
Helix 2	2	E	54	59	Right-handed alpha
Helix 3	3	E	143	148	Right-handed alpha
Helix 4	4	E	195	200	Right-handed alpha
Helix 5	5	E	200	213	Right-handed alpha
Helix 6	6	E	214	217	Right-handed 310
Helix 7	7	E	219	241	Right-handed alpha
Helix 8	8	E	242	245	Right-handed 310
Helix 9	9	E	255	281	Right-handed alpha
Helix 10	10	E	283	314	Right-handed alpha
Helix 11	11	B	49	52	Right-handed 310
Helix 12	12	B	54	59	Right-handed alpha
Helix 13	13	B	143	148	Right-handed alpha
Helix 14	14	B	195	200	Right-handed alpha
Helix 15	15	B	200	213	Right-handed alpha
Helix 16	16	B	214	217	Right-handed 310
Helix 17	17	B	219	241	Right-handed alpha
Helix 18	18	B	242	245	Right-handed 310
Helix 19	19	B	255	281	Right-handed alpha
Helix 20	20	B	283	314	Right-handed alpha
Helix 21	21	C	49	52	Right-handed 310
Helix 22	22	C	54	59	Right-handed alpha
Helix 23	23	C	143	148	Right-handed alpha
Helix 24	24	C	195	200	Right-handed alpha
Helix 25	25	C	200	213	Right-handed alpha
Helix 26	26	C	214	217	Right-handed 310
Helix 27	27	C	219	241	Right-handed alpha
Helix 28	28	C	242	245	Right-handed 310
Helix 29	29	C	255	281	Right-handed alpha
Helix 30	30	C	283	314	Right-handed alpha
Helix 31	31	A	49	52	Right-handed 310
Helix 32	32	A	54	59	Right-handed alpha
Helix 33	33	A	143	148	Right-handed alpha
Helix 34	34	A	195	200	Right-handed alpha
Helix 35	35	A	200	213	Right-handed alpha
Helix 36	36	A	214	217	Right-handed 310
Helix 37	37	A	219	241	Right-handed alpha
Helix 38	38	A	242	245	Right-handed 310
Helix 39	39	A	255	281	Right-handed alpha
Helix 40	40	A	283	314	Right-handed alpha
Helix 41	41	D	49	52	Right-handed 310
Helix 42	42	D	54	59	Right-handed alpha
Helix 43	43	D	143	148	Right-handed alpha
Helix 44	44	D	195	200	Right-handed alpha
Helix 45	45	D	200	213	Right-handed alpha
Helix 46	46	D	214	217	Right-handed 310
Helix 47	47	D	219	241	Right-handed alpha
Helix 48	48	D	242	245	Right-handed 310
Helix 49	49	D	255	281	Right-handed alpha
Helix 50	50	D	283	314	Right-handed alpha

There are 15 sheets in PDB entry 4LMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	86	93	anti-parallel
Strand 3	E	98	110	anti-parallel
Strand 4	E	80	81	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	86	93	anti-parallel
Strand 3	E	98	110	anti-parallel
Strand 4	E	35	47	anti-parallel
Strand 5	E	15	30	anti-parallel
Strand 6	E	138	142	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	122	132	anti-parallel
Strand 3	E	179	191	anti-parallel
Strand 4	E	159	174	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	98	110	anti-parallel
Strand 4	B	80	81	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	98	110	anti-parallel
Strand 4	B	35	47	anti-parallel
Strand 5	B	15	30	anti-parallel
Strand 6	B	138	142	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	122	132	anti-parallel
Strand 3	B	179	191	anti-parallel
Strand 4	B	159	174	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	86	93	anti-parallel
Strand 3	C	98	110	anti-parallel
Strand 4	C	80	81	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	86	93	anti-parallel
Strand 3	C	98	110	anti-parallel
Strand 4	C	35	47	anti-parallel
Strand 5	C	15	30	anti-parallel
Strand 6	C	138	142	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	179	191	anti-parallel
Strand 4	C	159	174	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	98	110	anti-parallel
Strand 4	A	80	81	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	98	110	anti-parallel
Strand 4	A	35	47	anti-parallel
Strand 5	A	15	30	anti-parallel
Strand 6	A	138	142	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	122	132	anti-parallel
Strand 3	A	179	191	anti-parallel
Strand 4	A	159	174	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	86	93	anti-parallel
Strand 3	D	98	110	anti-parallel
Strand 4	D	80	81	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	86	93	anti-parallel
Strand 3	D	98	110	anti-parallel
Strand 4	D	35	47	anti-parallel
Strand 5	D	15	30	anti-parallel
Strand 6	D	138	142	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	122	132	anti-parallel
Strand 3	D	179	191	anti-parallel
Strand 4	D	159	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4LMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMJ