Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LMO entry

There are 4 chains in PDB entry 4LMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 294SER 544
B
SER 294SER 544
C
SER 294SER 544
D
SER 294SER 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4LMO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
295 306Right-handed alpha
Helix 2
2
A
309 317Right-handed 310
Helix 3
3
A
329 339Right-handed alpha
Helix 4
4
A
341 347Right-handed 310
Helix 5
5
A
356 361Right-handed alpha
Helix 6
6
A
362 376Right-handed alpha
Helix 7
7
A
377 384Right-handed alpha
Helix 8
8
A
398 403Right-handed alpha
Helix 9
9
A
408 424Right-handed alpha
Helix 10
10
A
425 430Right-handed alpha
Helix 11
11
A
431 449Right-handed alpha
Helix 12
12
A
455 460Right-handed alpha
Helix 13
13
A
464 472Right-handed 310
Helix 14
14
A
480 501Right-handed alpha
Helix 15
15
A
501 510Right-handed alpha
Helix 16
16
A
528 542Right-handed alpha
Helix 17
17
B
295 306Right-handed alpha
Helix 18
18
B
309 317Right-handed 310
Helix 19
19
B
329 339Right-handed alpha
Helix 20
20
B
341 347Right-handed 310
Helix 21
21
B
356 361Right-handed alpha
Helix 22
22
B
362 376Right-handed alpha
Helix 23
23
B
377 384Right-handed alpha
Helix 24
24
B
398 402Right-handed 310
Helix 25
25
B
408 424Right-handed alpha
Helix 26
26
B
425 430Right-handed 310
Helix 27
27
B
431 446Right-handed alpha
Helix 28
28
B
455 460Right-handed alpha
Helix 29
29
B
464 472Right-handed 310
Helix 30
30
B
480 501Right-handed alpha
Helix 31
31
B
502 510Right-handed alpha
Helix 32
32
B
528 541Right-handed alpha
Helix 33
33
C
295 306Right-handed alpha
Helix 34
34
C
309 317Right-handed 310
Helix 35
35
C
329 339Right-handed alpha
Helix 36
36
C
341 347Right-handed 310
Helix 37
37
C
356 361Right-handed alpha
Helix 38
38
C
362 376Right-handed alpha
Helix 39
39
C
377 386Right-handed alpha
Helix 40
40
C
398 402Right-handed 310
Helix 41
41
C
408 424Right-handed alpha
Helix 42
42
C
425 430Right-handed alpha
Helix 43
43
C
431 448Right-handed alpha
Helix 44
44
C
455 461Right-handed alpha
Helix 45
45
C
464 472Right-handed 310
Helix 46
46
C
480 501Right-handed alpha
Helix 47
47
C
501 510Right-handed alpha
Helix 48
48
C
528 542Right-handed alpha
Helix 49
49
D
295 306Right-handed alpha
Helix 50
50
D
309 316Right-handed 310
Helix 51
51
D
329 339Right-handed alpha
Helix 52
52
D
341 347Right-handed 310
Helix 53
53
D
356 361Right-handed alpha
Helix 54
54
D
362 375Right-handed alpha
Helix 55
55
D
377 384Right-handed alpha
Helix 56
56
D
398 402Right-handed 310
Helix 57
57
D
408 424Right-handed alpha
Helix 58
58
D
425 429Right-handed 310
Helix 59
59
D
431 449Right-handed alpha
Helix 60
60
D
455 461Right-handed alpha
Helix 61
61
D
464 472Right-handed 310
Helix 62
62
D
480 501Right-handed alpha
Helix 63
63
D
502 510Right-handed alpha
Helix 64
64
D
528 540Right-handed alpha
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There are 8 sheets in PDB entry 4LMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
319 320first strand
Strand 2
A
325 326anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
511 514first strand
Strand 2
A
524 527anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
319 320first strand
Strand 2
B
325 326anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
511 514first strand
Strand 2
B
524 527anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
319 320first strand
Strand 2
C
325 326anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
511 515first strand
Strand 2
C
523 527anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
318 320first strand
Strand 2
D
325 327anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
511 515first strand
Strand 2
D
523 527anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il