Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LMP entry

There is 1 chain in PDB entry 4LMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4LMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
46 53Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
78 85Right-handed 310
Helix 6
6
A
96 99Right-handed 310
Helix 7
7
A
100 111Right-handed alpha
Helix 8
8
A
118 120Right-handed 310
Helix 9
9
A
130 149Right-handed alpha
Helix 10
10
A
150 154Right-handed 310
Helix 11
11
A
177 190Right-handed alpha
Helix 12
12
A
200 211Right-handed alpha
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
251 257Right-handed alpha
Helix 15
15
A
268 272Right-handed 310
Helix 16
16
A
300 304Right-handed 310
Helix 17
17
A
305 336Right-handed alpha
Helix 18
18
A
336 341Right-handed alpha
Helix 19
19
A
352 360Right-handed alpha
Helix 20
20
A
366 371Right-handed alpha
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There are 2 sheets in PDB entry 4LMP. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
32 36parallel
Strand 3
A
2 5parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 350anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
193 198parallel
Strand 3
A
170 174parallel
Strand 4
A
234 237parallel
Strand 5
A
263 266parallel
Strand 6
A
293 296parallel
Strand 7
A
287 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il