Analysis of interatomic Contacts of Structural Units in PDB entry:
4LMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LMR entry

There are 2 chains in PDB entry 4LMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 314
B
 LYS 3LEU 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4LMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
39 52Right-handed alpha
Helix 3
3
A
53 57Right-handed 310
Helix 4
4
A
67 72Right-handed 310
Helix 5
5
A
90 112Right-handed alpha
Helix 6
6
A
124 137Right-handed alpha
Helix 7
7
A
139 141Right-handed 310
Helix 8
8
A
148 164Right-handed alpha
Helix 9
9
A
166 168Right-handed 310
Helix 10
10
A
186 188Right-handed 310
Helix 11
11
A
196 202Right-handed alpha
Helix 12
12
A
207 220Right-handed alpha
Helix 13
13
A
220 230Right-handed alpha
Helix 14
14
A
233 249Right-handed alpha
Helix 15
15
A
264 266Right-handed 310
Helix 16
16
A
292 311Right-handed alpha
Helix 17
17
A
312 314Right-handed 310
Helix 18
18
B
14 27Right-handed alpha
Helix 19
19
B
39 52Right-handed alpha
Helix 20
20
B
53 57Right-handed 310
Helix 21
21
B
67 72Right-handed 310
Helix 22
22
B
90 112Right-handed alpha
Helix 23
23
B
124 137Right-handed alpha
Helix 24
24
B
139 141Right-handed 310
Helix 25
25
B
148 164Right-handed alpha
Helix 26
26
B
166 168Right-handed 310
Helix 27
27
B
186 188Right-handed 310
Helix 28
28
B
196 202Right-handed alpha
Helix 29
29
B
207 230Right-handed alpha
Helix 30
30
B
233 249Right-handed alpha
Helix 31
31
B
264 266Right-handed 310
Helix 32
32
B
292 310Right-handed alpha
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There are 8 sheets in PDB entry 4LMR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
32 36parallel
Strand 3
A
7 11parallel
Strand 4
A
76 79parallel
Strand 5
A
117 120parallel
Strand 6
A
143 145parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
190 191anti-parallel
Strand 3
A
194 195anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
183 184anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 262first strand
Strand 2
A
268 279anti-parallel
Strand 3
A
282 286anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
32 36parallel
Strand 3
B
7 11parallel
Strand 4
B
76 79parallel
Strand 5
B
117 120parallel
Strand 6
B
143 145parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
190 191anti-parallel
Strand 3
B
194 195anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
183 184anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 262first strand
Strand 2
B
268 279anti-parallel
Strand 3
B
282 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il