Analysis of interatomic Contacts of Structural Units in PDB entry:
4LO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LO6 entry

There are 2 chains in PDB entry 4LO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20THR 189
B
 THR 206ASN 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 4LO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 92Right-handed alpha
Helix 2
2
A
94 99Right-handed alpha
Helix 3
3
A
164 169Right-handed alpha
Helix 4
4
B
269 282Right-handed alpha
Helix 5
5
B
398 402Right-handed 310
Helix 6
6
B
424 426Right-handed 310
Helix 7
7
B
502 508Right-handed 310
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There are 8 sheets in PDB entry 4LO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
138 157anti-parallel
Strand 3
A
116 133anti-parallel
Strand 4
A
49 53anti-parallel
Strand 5
B
339 344parallel
Strand 6
B
305 310anti-parallel
Strand 7
B
233 239anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
116 133anti-parallel
Strand 4
A
138 157anti-parallel
Strand 5
B
442 443anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
174 175anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 110first strand
Strand 2
A
57 64anti-parallel
Strand 3
B
292 298anti-parallel
Strand 4
B
244 249anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
325 335anti-parallel
Strand 3
B
313 322anti-parallel
Strand 4
B
215 220anti-parallel
Strand 5
B
371 375anti-parallel
Strand 6
B
454 460anti-parallel
Strand 7
B
430 434anti-parallel
Strand 8
B
479 484anti-parallel
Strand 9
B
406 411anti-parallel
Strand 10
B
382 384parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
362 364anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 396first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
416 422anti-parallel
Strand 4
B
468 474anti-parallel
Strand 5
B
510 514anti-parallel
Strand 6
B
536 542parallel
Strand 7
B
603 612anti-parallel
Strand 8
B
563 574anti-parallel
Strand 9
B
577 588anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 529first strand
Strand 2
B
617 625anti-parallel
Strand 3
B
552 559anti-parallel
Strand 4
B
596 599anti-parallel
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