Analysis of interatomic Contacts of Structural Units in PDB entry:
4LOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LOG entry

There are 2 chains in PDB entry 4LOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ASN 1410
B
 ILE 331ASN 1410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4LOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
44 56Right-handed alpha
Helix 3
3
A
68 75Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
134 144Right-handed alpha
Helix 7
7
A
155 166Right-handed alpha
Helix 8
8
A
187 203Right-handed alpha
Helix 9
9
A
211 222Right-handed alpha
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
274 285Right-handed alpha
Helix 12
12
A
288 299Right-handed alpha
Helix 13
13
A
306 314Right-handed alpha
Helix 14
14
A
316 329Right-handed alpha
Helix 15
15
A
337 355Right-handed alpha
Helix 16
16
A
358 371Right-handed alpha
Helix 17
17
A
1219 1238Right-handed alpha
Helix 18
18
A
1238 1243Right-handed alpha
Helix 19
19
A
1245 1256Right-handed alpha
Helix 20
20
A
1256 1269Right-handed alpha
Helix 21
21
A
1294 1313Right-handed alpha
Helix 22
22
A
1316 1329Right-handed alpha
Helix 23
23
A
1338 1361Right-handed alpha
Helix 24
24
A
1366 1373Right-handed alpha
Helix 25
25
A
1376 1381Right-handed alpha
Helix 26
26
A
1382 1391Right-handed alpha
Helix 27
27
A
1398 1409Right-handed alpha
Helix 28
28
B
339 353Right-handed alpha
Helix 29
29
B
359 371Right-handed alpha
Helix 30
30
B
1218 1223Right-handed alpha
Helix 31
31
B
1224 1237Right-handed alpha
Helix 32
32
B
1238 1243Right-handed alpha
Helix 33
33
B
1245 1269Right-handed alpha
Helix 34
34
B
1296 1313Right-handed alpha
Helix 35
35
B
1316 1329Right-handed alpha
Helix 36
36
B
1338 1361Right-handed alpha
Helix 37
37
B
1366 1373Right-handed alpha
Helix 38
38
B
1374 1380Right-handed 310
Helix 39
39
B
1382 1391Right-handed alpha
Helix 40
40
B
1398 1406Right-handed alpha
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There are 5 sheets in PDB entry 4LOG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
303 304anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
330 331parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
226 229parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
244 247anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
178 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il