Analysis of interatomic Contacts of Structural Units in PDB entry:
4LPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LPZ entry

There are 4 chains in PDB entry 4LPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 361VAL 464
B
 THR 361VAL 464
C
 HIS 595ILE 625
D
 LEU 596SER 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4LPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
379 384Right-handed alpha
Helix 2
2
A
387 392Right-handed alpha
Helix 3
3
A
396 400Right-handed 310
Helix 4
4
A
401 403Right-handed 310
Helix 5
5
A
404 419Right-handed alpha
Helix 6
6
B
379 384Right-handed alpha
Helix 7
7
B
387 392Right-handed alpha
Helix 8
8
B
395 400Right-handed 310
Helix 9
9
B
401 403Right-handed 310
Helix 10
10
B
404 418Right-handed alpha
Helix 11
11
C
596 624Right-handed alpha
Helix 12
12
D
597 624Right-handed alpha
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There are 2 sheets in PDB entry 4LPZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
457 463anti-parallel
Strand 4
A
436 445anti-parallel
Strand 5
A
423 430anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
456 463anti-parallel
Strand 4
B
436 446anti-parallel
Strand 5
B
422 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il