Analysis of interatomic Contacts of Structural Units in PDB entry:
4LQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LQC entry

There are 2 chains in PDB entry 4LQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 118TRP 253
B
 GLU 118TRP 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4LQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
128 130Right-handed 310
Helix 2
2
A
132 144Right-handed alpha
Helix 3
3
A
160 170Right-handed alpha
Helix 4
4
A
180 185Right-handed alpha
Helix 5
5
A
189 195Right-handed alpha
Helix 6
6
A
215 221Right-handed alpha
Helix 7
7
A
223 229Right-handed alpha
Helix 8
8
A
238 251Right-handed alpha
Helix 9
9
B
128 130Right-handed 310
Helix 10
10
B
132 144Right-handed alpha
Helix 11
11
B
150 152Right-handed 310
Helix 12
12
B
160 170Right-handed alpha
Helix 13
13
B
181 185Right-handed alpha
Helix 14
14
B
189 196Right-handed alpha
Helix 15
15
B
215 221Right-handed alpha
Helix 16
16
B
223 229Right-handed alpha
Helix 17
17
B
238 249Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4LQC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
121 126parallel
Strand 3
A
154 155parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
121 126parallel
Strand 3
A
174 179parallel
Strand 4
A
207 211parallel
Strand 5
A
232 233parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
119 126parallel
Strand 3
B
154 155parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
119 126parallel
Strand 3
B
172 180parallel
Strand 4
B
207 212parallel
Strand 5
B
232 233parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il