Analysis of interatomic Contacts of Structural Units in PDB entry:
4LRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LRJ entry

There are 2 chains in PDB entry 4LRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 131ILE 293
B
 LEU 132ILE 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4LRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
166 182Right-handed alpha
Helix 2
2
A
218 233Right-handed alpha
Helix 3
3
A
270 291Right-handed alpha
Helix 4
4
B
166 182Right-handed alpha
Helix 5
5
B
218 233Right-handed alpha
Helix 6
6
B
271 291Right-handed alpha
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There are 4 sheets in PDB entry 4LRJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 141first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
196 202anti-parallel
Strand 5
A
186 190anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
253 256anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 141first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
156 161anti-parallel
Strand 4
B
196 202anti-parallel
Strand 5
B
186 190anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
253 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il