Analysis of interatomic Contacts of Structural Units in PDB entry:
4LRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LRY entry

There are 4 chains in PDB entry 4LRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 356
B
 MET 1LYS 356
C
 SER 13VAL 306
D
 SER 13VAL 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4LRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
60 64Right-handed 310
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
106 122Right-handed alpha
Helix 5
5
A
151 167Right-handed alpha
Helix 6
6
A
169 182Right-handed alpha
Helix 7
7
A
230 245Right-handed alpha
Helix 8
8
A
289 308Right-handed alpha
Helix 9
9
A
336 345Right-handed alpha
Helix 10
10
B
10 23Right-handed alpha
Helix 11
11
B
60 64Right-handed 310
Helix 12
12
B
82 94Right-handed alpha
Helix 13
13
B
106 122Right-handed alpha
Helix 14
14
B
151 167Right-handed alpha
Helix 15
15
B
169 182Right-handed alpha
Helix 16
16
B
196 200Right-handed 310
Helix 17
17
B
230 245Right-handed alpha
Helix 18
18
B
289 307Right-handed alpha
Helix 19
19
B
336 344Right-handed alpha
Helix 20
20
C
14 27Right-handed alpha
Helix 21
21
C
39 49Right-handed alpha
Helix 22
22
C
50 67Right-handed alpha
Helix 23
23
C
90 99Right-handed alpha
Helix 24
24
C
109 114Right-handed alpha
Helix 25
25
C
116 125Right-handed alpha
Helix 26
26
C
133 135Right-handed 310
Helix 27
27
C
137 141Right-handed 310
Helix 28
28
C
168 170Right-handed 310
Helix 29
29
C
173 210Right-handed alpha
Helix 30
30
C
229 237Right-handed alpha
Helix 31
31
C
239 244Right-handed alpha
Helix 32
32
C
247 252Right-handed alpha
Helix 33
33
C
255 265Right-handed alpha
Helix 34
34
D
14 25Right-handed alpha
Helix 35
35
D
39 50Right-handed alpha
Helix 36
36
D
50 67Right-handed alpha
Helix 37
37
D
90 100Right-handed alpha
Helix 38
38
D
109 114Right-handed alpha
Helix 39
39
D
116 125Right-handed alpha
Helix 40
40
D
133 135Right-handed 310
Helix 41
41
D
137 141Right-handed 310
Helix 42
42
D
168 170Right-handed 310
Helix 43
43
D
173 211Right-handed alpha
Helix 44
44
D
229 236Right-handed alpha
Helix 45
45
D
239 244Right-handed alpha
Helix 46
46
D
247 252Right-handed alpha
Helix 47
47
D
255 265Right-handed alpha
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There are 10 sheets in PDB entry 4LRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
47 54parallel
Strand 5
A
99 104parallel
Strand 6
A
127 132parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
184 192anti-parallel
Strand 4
A
326 335anti-parallel
Strand 5
A
277 284anti-parallel
Strand 6
A
310 317parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 256first strand
Strand 2
A
261 269anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
47 54parallel
Strand 5
B
99 104parallel
Strand 6
B
127 132parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
210 213anti-parallel
Strand 3
B
184 192anti-parallel
Strand 4
B
326 334anti-parallel
Strand 5
B
277 284anti-parallel
Strand 6
B
310 317parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 256first strand
Strand 2
B
261 269anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 89first strand
Strand 2
C
74 79anti-parallel
Strand 3
C
157 166anti-parallel
Strand 4
C
143 151anti-parallel
Strand 5
C
128 131anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 228first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
297 304anti-parallel
Strand 4
C
280 292anti-parallel
Strand 5
C
268 277anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 89first strand
Strand 2
D
74 78anti-parallel
Strand 3
D
157 166anti-parallel
Strand 4
D
143 151anti-parallel
Strand 5
D
128 131anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
225 228first strand
Strand 2
D
215 219anti-parallel
Strand 3
D
296 304anti-parallel
Strand 4
D
280 293anti-parallel
Strand 5
D
268 277anti-parallel
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