Analysis of interatomic Contacts of Structural Units in PDB entry:
4LRZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LRZ entry

There are 6 chains in PDB entry 4LRZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 210
B
 GLY 0GLU 210
C
 GLY 0GLU 210
D
 GLY 0GLU 210
E
 SER 13VAL 306
F
 SER 13SER 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 94 helices in PDB entry 4LRZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 22Right-handed alpha
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
37 57Right-handed alpha
Helix 4
4
A
60 76Right-handed alpha
Helix 5
5
A
79 95Right-handed alpha
Helix 6
6
A
103 122Right-handed alpha
Helix 7
7
A
130 147Right-handed alpha
Helix 8
8
A
150 169Right-handed alpha
Helix 9
9
A
170 172Right-handed 310
Helix 10
10
A
177 187Right-handed 310
Helix 11
11
A
191 209Right-handed alpha
Helix 12
12
B
5 22Right-handed alpha
Helix 13
13
B
22 34Right-handed alpha
Helix 14
14
B
37 57Right-handed alpha
Helix 15
15
B
60 76Right-handed alpha
Helix 16
16
B
79 95Right-handed alpha
Helix 17
17
B
103 122Right-handed alpha
Helix 18
18
B
130 147Right-handed alpha
Helix 19
19
B
150 169Right-handed alpha
Helix 20
20
B
170 172Right-handed 310
Helix 21
21
B
177 187Right-handed 310
Helix 22
22
B
191 208Right-handed alpha
Helix 23
23
C
5 22Right-handed alpha
Helix 24
24
C
22 34Right-handed alpha
Helix 25
25
C
37 57Right-handed alpha
Helix 26
26
C
60 76Right-handed alpha
Helix 27
27
C
79 95Right-handed alpha
Helix 28
28
C
103 122Right-handed alpha
Helix 29
29
C
130 147Right-handed alpha
Helix 30
30
C
150 169Right-handed alpha
Helix 31
31
C
170 172Right-handed 310
Helix 32
32
C
177 187Right-handed 310
Helix 33
33
C
191 208Right-handed alpha
Helix 34
34
D
5 22Right-handed alpha
Helix 35
35
D
22 34Right-handed alpha
Helix 36
36
D
37 57Right-handed alpha
Helix 37
37
D
60 76Right-handed alpha
Helix 38
38
D
79 95Right-handed alpha
Helix 39
39
D
103 122Right-handed alpha
Helix 40
40
D
130 147Right-handed alpha
Helix 41
41
D
150 169Right-handed alpha
Helix 42
42
D
170 172Right-handed 310
Helix 43
43
D
177 187Right-handed 310
Helix 44
44
D
191 208Right-handed alpha
Helix 45
45
E
14 27Right-handed alpha
Helix 46
46
E
39 50Right-handed alpha
Helix 47
47
E
50 67Right-handed alpha
Helix 48
48
E
90 100Right-handed alpha
Helix 49
49
E
109 114Right-handed alpha
Helix 50
50
E
116 125Right-handed alpha
Helix 51
51
E
133 135Right-handed 310
Helix 52
52
E
137 141Right-handed 310
Helix 53
53
E
168 170Right-handed 310
Helix 54
54
E
173 212Right-handed alpha
Helix 55
55
E
229 236Right-handed alpha
Helix 56
56
E
247 252Right-handed alpha
Helix 57
57
E
255 264Right-handed alpha
Helix 58
58
F
14 27Right-handed alpha
Helix 59
59
F
39 50Right-handed alpha
Helix 60
60
F
50 67Right-handed alpha
Helix 61
61
F
90 100Right-handed alpha
Helix 62
62
F
109 114Right-handed alpha
Helix 63
63
F
116 125Right-handed alpha
Helix 64
64
F
133 135Right-handed 310
Helix 65
65
F
137 141Right-handed 310
Helix 66
66
F
168 170Right-handed 310
Helix 67
67
F
173 212Right-handed alpha
Helix 68
68
F
229 236Right-handed alpha
Helix 69
69
F
255 265Right-handed alpha
Helix 70
70
G
14 27Right-handed alpha
Helix 71
71
G
39 50Right-handed alpha
Helix 72
72
G
50 67Right-handed alpha
Helix 73
73
G
90 100Right-handed alpha
Helix 74
74
G
109 114Right-handed alpha
Helix 75
75
G
116 125Right-handed alpha
Helix 76
76
G
133 135Right-handed 310
Helix 77
77
G
137 141Right-handed 310
Helix 78
78
G
168 170Right-handed 310
Helix 79
79
G
173 212Right-handed alpha
Helix 80
80
G
229 236Right-handed alpha
Helix 81
81
G
255 265Right-handed alpha
Helix 82
82
H
14 27Right-handed alpha
Helix 83
83
H
39 50Right-handed alpha
Helix 84
84
H
50 67Right-handed alpha
Helix 85
85
H
90 100Right-handed alpha
Helix 86
86
H
109 114Right-handed alpha
Helix 87
87
H
116 125Right-handed alpha
Helix 88
88
H
133 135Right-handed 310
Helix 89
89
H
137 141Right-handed 310
Helix 90
90
H
168 170Right-handed 310
Helix 91
91
H
173 212Right-handed alpha
Helix 92
92
H
229 236Right-handed alpha
Helix 93
93
H
247 252Right-handed alpha
Helix 94
94
H
255 265Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4LRZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 89first strand
Strand 2
E
74 79anti-parallel
Strand 3
E
157 166anti-parallel
Strand 4
E
143 151anti-parallel
Strand 5
E
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
225 228first strand
Strand 2
E
215 219anti-parallel
Strand 3
E
296 304anti-parallel
Strand 4
E
281 293anti-parallel
Strand 5
E
268 276anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 89first strand
Strand 2
F
74 79anti-parallel
Strand 3
F
157 166anti-parallel
Strand 4
F
143 151anti-parallel
Strand 5
F
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
225 228first strand
Strand 2
F
215 219anti-parallel
Strand 3
F
296 304anti-parallel
Strand 4
F
281 293anti-parallel
Strand 5
F
268 276anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
84 89first strand
Strand 2
G
74 79anti-parallel
Strand 3
G
157 166anti-parallel
Strand 4
G
143 151anti-parallel
Strand 5
G
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
225 228first strand
Strand 2
G
215 219anti-parallel
Strand 3
G
296 304anti-parallel
Strand 4
G
281 293anti-parallel
Strand 5
G
268 276anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
84 89first strand
Strand 2
H
74 79anti-parallel
Strand 3
H
157 166anti-parallel
Strand 4
H
143 151anti-parallel
Strand 5
H
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
225 228first strand
Strand 2
H
215 219anti-parallel
Strand 3
H
296 304anti-parallel
Strand 4
H
282 293anti-parallel
Strand 5
H
268 275anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il