Analysis of interatomic Contacts of Structural Units in PDB entry:
4LSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LSD entry

There are 8 chains in PDB entry 4LSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 29GLU 126
B
 SER 30ARG 123
C
 MSE 29ARG 123
D
 SER 30ARG 123
E
 SER 30ARG 123
F
 SER 30LYS 127
G
 SER 30ARG 123
H
 SER 30ARG 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 4LSD. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
55 57Right-handed 310
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There are 16 sheets in PDB entry 4LSD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
86 89anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
59 68anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
B
74 80anti-parallel
Strand 6
B
59 68anti-parallel
Strand 7
B
97 106anti-parallel
Strand 8
B
109 110anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
59 68anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
B
74 80anti-parallel
Strand 6
B
59 68anti-parallel
Strand 7
B
97 106anti-parallel
Strand 8
B
117 120anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
86 89anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
86 89anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
97 106anti-parallel
Strand 3
C
59 68anti-parallel
Strand 4
C
74 80anti-parallel
Strand 5
D
74 80anti-parallel
Strand 6
D
59 68anti-parallel
Strand 7
D
97 106anti-parallel
Strand 8
D
109 110anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
97 106anti-parallel
Strand 3
C
59 68anti-parallel
Strand 4
C
74 80anti-parallel
Strand 5
D
74 80anti-parallel
Strand 6
D
59 68anti-parallel
Strand 7
D
97 106anti-parallel
Strand 8
D
117 120anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 40first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
86 89anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 40first strand
Strand 2
E
48 52anti-parallel
Strand 3
E
86 88anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
109 110first strand
Strand 2
E
97 106anti-parallel
Strand 3
E
59 68anti-parallel
Strand 4
E
74 80anti-parallel
Strand 5
F
74 80anti-parallel
Strand 6
F
61 68anti-parallel
Strand 7
F
97 106anti-parallel
Strand 8
F
109 110anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 120first strand
Strand 2
E
97 106anti-parallel
Strand 3
E
59 68anti-parallel
Strand 4
E
74 80anti-parallel
Strand 5
F
74 80anti-parallel
Strand 6
F
61 68anti-parallel
Strand 7
F
97 106anti-parallel
Strand 8
F
117 120anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 40first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
86 89anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 40first strand
Strand 2
G
47 52anti-parallel
Strand 3
G
86 89anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
109 110first strand
Strand 2
G
97 106anti-parallel
Strand 3
G
61 68anti-parallel
Strand 4
G
74 80anti-parallel
Strand 5
H
74 80anti-parallel
Strand 6
H
59 68anti-parallel
Strand 7
H
97 106anti-parallel
Strand 8
H
109 110anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
117 120first strand
Strand 2
G
97 106anti-parallel
Strand 3
G
61 68anti-parallel
Strand 4
G
74 80anti-parallel
Strand 5
H
74 80anti-parallel
Strand 6
H
59 68anti-parallel
Strand 7
H
97 106anti-parallel
Strand 8
H
117 120anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
35 43first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
86 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il