Analysis of interatomic Contacts of Structural Units in PDB entry:
4LUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LUY entry

There are 6 chains in PDB entry 4LUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ILE 38
A
 ALA 40VAL 129
A
 ILE 131LYS 385
B
 LYS 3ILE 38
B
 ALA 40VAL 129
B
 ILE 131LYS 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4LUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
66 75Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
92 99Right-handed alpha
Helix 7
7
A
107 122Right-handed alpha
Helix 8
8
A
143 154Right-handed alpha
Helix 9
9
A
176 196Right-handed alpha
Helix 10
10
A
207 214Right-handed alpha
Helix 11
11
A
215 218Right-handed 310
Helix 12
12
A
225 230Right-handed 310
Helix 13
13
A
238 242Right-handed 310
Helix 14
14
A
267 271Right-handed 310
Helix 15
15
A
286 290Right-handed 310
Helix 16
16
A
343 352Right-handed alpha
Helix 17
17
A
354 361Right-handed alpha
Helix 18
18
B
14 26Right-handed alpha
Helix 19
19
B
38 44Right-handed alpha
Helix 20
20
B
46 57Right-handed alpha
Helix 21
21
B
66 76Right-handed alpha
Helix 22
22
B
89 91Right-handed 310
Helix 23
23
B
92 99Right-handed alpha
Helix 24
24
B
107 122Right-handed alpha
Helix 25
25
B
143 156Right-handed alpha
Helix 26
26
B
176 196Right-handed alpha
Helix 27
27
B
207 214Right-handed alpha
Helix 28
28
B
215 218Right-handed 310
Helix 29
29
B
225 230Right-handed 310
Helix 30
30
B
238 242Right-handed 310
Helix 31
31
B
267 271Right-handed 310
Helix 32
32
B
286 290Right-handed 310
Helix 33
33
B
343 352Right-handed alpha
Helix 34
34
B
354 361Right-handed alpha
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There are 8 sheets in PDB entry 4LUY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
9 13anti-parallel
Strand 4
A
367 372parallel
Strand 5
A
375 380anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
61 64parallel
Strand 3
A
82 84parallel
Strand 4
A
101 105parallel
Strand 5
A
125 130parallel
Strand 6
A
159 165parallel
Strand 7
A
202 206parallel
Strand 8
A
221 224parallel
Strand 9
A
33 37parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
278 283anti-parallel
Strand 3
A
318 322anti-parallel
Strand 4
A
305 310anti-parallel
Strand 5
A
299 302anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
272 273anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 337first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
9 13anti-parallel
Strand 4
B
367 372parallel
Strand 5
B
375 380anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
61 64parallel
Strand 3
B
82 84parallel
Strand 4
B
101 105parallel
Strand 5
B
125 130parallel
Strand 6
B
159 165parallel
Strand 7
B
202 204parallel
Strand 8
B
221 224parallel
Strand 9
B
33 37parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
278 283anti-parallel
Strand 3
B
318 322anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
305 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il