Analysis of interatomic Contacts of Structural Units in PDB entry:
4LV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LV5 entry

There are 2 chains in PDB entry 4LV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 175SER 538
B
 ASN 14LEU 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4LV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
175 188Right-handed alpha
Helix 2
2
A
188 202Right-handed alpha
Helix 3
3
A
203 215Right-handed alpha
Helix 4
4
A
271 287Right-handed alpha
Helix 5
5
A
344 354Right-handed alpha
Helix 6
6
A
358 383Right-handed alpha
Helix 7
7
A
391 393Right-handed 310
Helix 8
8
A
407 409Right-handed 310
Helix 9
9
A
421 423Right-handed 310
Helix 10
10
A
424 428Right-handed 310
Helix 11
11
A
429 433Right-handed 310
Helix 12
12
A
441 459Right-handed alpha
Helix 13
13
A
496 507Right-handed alpha
Helix 14
14
A
516 522Right-handed alpha
Helix 15
15
A
523 538Right-handed alpha
Helix 16
16
B
15 26Right-handed alpha
Helix 17
17
B
35 48Right-handed alpha
Helix 18
18
B
50 67Right-handed alpha
Helix 19
19
B
81 91Right-handed alpha
Helix 20
20
B
103 109Right-handed alpha
Helix 21
21
B
129 133Right-handed 310
Helix 22
22
B
136 144Right-handed alpha
Helix 23
23
B
145 149Right-handed 310
Helix 24
24
B
161 174Right-handed alpha
Helix 25
25
B
184 196Right-handed alpha
Helix 26
26
B
201 220Right-handed alpha
Helix 27
27
B
239 250Right-handed alpha
Helix 28
28
B
251 254Right-handed 310
Helix 29
29
B
255 263Right-handed alpha
Helix 30
30
B
267 289Right-handed alpha
Helix 31
31
B
295 299Right-handed 310
Helix 32
32
B
302 320Right-handed alpha
Helix 33
33
B
323 334Right-handed alpha
Helix 34
34
B
337 343Right-handed alpha
Helix 35
35
B
344 345Right-handed 310
Helix 36
36
B
346 350Right-handed 310
Helix 37
37
B
358 375Right-handed alpha
Helix 38
38
B
385 410Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4LV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 243anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
330 337anti-parallel
Strand 6
A
308 312anti-parallel
Strand 7
A
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
411 413anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
437 439anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
70 75parallel
Strand 4
B
151 157parallel
Strand 5
B
179 183parallel
Strand 6
B
227 229parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il