Analysis of interatomic Contacts of Structural Units in PDB entry:
4LV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LV8 entry

There are 2 chains in PDB entry 4LV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 176SER 538
B
 ASN 14CYS 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4LV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
177 188Right-handed alpha
Helix 2
2
A
188 200Right-handed alpha
Helix 3
3
A
203 215Right-handed alpha
Helix 4
4
A
272 286Right-handed alpha
Helix 5
5
A
294 301Right-handed alpha
Helix 6
6
A
344 354Right-handed alpha
Helix 7
7
A
363 383Right-handed alpha
Helix 8
8
A
391 393Right-handed 310
Helix 9
9
A
407 411Right-handed 310
Helix 10
10
A
421 423Right-handed 310
Helix 11
11
A
424 428Right-handed 310
Helix 12
12
A
429 433Right-handed 310
Helix 13
13
A
441 459Right-handed alpha
Helix 14
14
A
496 507Right-handed alpha
Helix 15
15
A
516 521Right-handed alpha
Helix 16
16
A
523 538Right-handed alpha
Helix 17
17
B
15 25Right-handed alpha
Helix 18
18
B
35 49Right-handed alpha
Helix 19
19
B
50 68Right-handed alpha
Helix 20
20
B
81 90Right-handed alpha
Helix 21
21
B
103 109Right-handed alpha
Helix 22
22
B
129 133Right-handed 310
Helix 23
23
B
136 144Right-handed alpha
Helix 24
24
B
145 149Right-handed 310
Helix 25
25
B
161 174Right-handed alpha
Helix 26
26
B
184 196Right-handed alpha
Helix 27
27
B
197 200Right-handed 310
Helix 28
28
B
201 220Right-handed alpha
Helix 29
29
B
239 251Right-handed alpha
Helix 30
30
B
252 254Right-handed 310
Helix 31
31
B
255 263Right-handed alpha
Helix 32
32
B
267 289Right-handed alpha
Helix 33
33
B
295 299Right-handed 310
Helix 34
34
B
302 320Right-handed alpha
Helix 35
35
B
323 329Right-handed alpha
Helix 36
36
B
339 343Right-handed alpha
Helix 37
37
B
344 345Right-handed 310
Helix 38
38
B
346 350Right-handed 310
Helix 39
39
B
358 375Right-handed alpha
Helix 40
40
B
385 410Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4LV8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 242anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
330 337anti-parallel
Strand 6
A
308 312anti-parallel
Strand 7
A
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
412 413anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
437 439anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
70 76parallel
Strand 4
B
151 157parallel
Strand 5
B
179 183parallel
Strand 6
B
227 229parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il