Analysis of interatomic Contacts of Structural Units in PDB entry:
4LVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LVH entry

There are 12 chains in PDB entry 4LVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 49GLU 427
B
LYS 2ALA 222
C
ILE 1ASN 210
D
PRO 49THR 270
E
LYS 2ALA 222
F
ILE 1ASN 210
G
PRO 49THR 270
H
LYS 2ALA 222
I
ILE 1ASN 210
J
PRO 49THR 270
K
LYS 2ALA 222
L
ILE 1ASN 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4LVH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
56 63Right-handed alpha
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
184 190Right-handed alpha
Helix 4
4
B
86 90Right-handed 310
Helix 5
5
B
195 197Right-handed 310
Helix 6
6
C
124 130Right-handed alpha
Helix 7
7
D
56 63Right-handed alpha
Helix 8
8
D
97 105Right-handed alpha
Helix 9
9
D
118 123Right-handed alpha
Helix 10
10
D
185 193Right-handed alpha
Helix 11
11
E
27 31Right-handed 310
Helix 12
12
E
86 90Right-handed 310
Helix 13
13
E
195 197Right-handed 310
Helix 14
14
F
124 131Right-handed alpha
Helix 15
15
G
56 63Right-handed alpha
Helix 16
16
G
84 88Right-handed 310
Helix 17
17
G
97 105Right-handed alpha
Helix 18
18
G
184 193Right-handed alpha
Helix 19
19
I
124 129Right-handed alpha
Helix 20
20
J
56 61Right-handed alpha
Helix 21
21
J
97 105Right-handed alpha
Helix 22
22
J
184 193Right-handed alpha
Helix 23
23
K
27 31Right-handed 310
Helix 24
24
K
86 90Right-handed 310
Helix 25
25
K
164 168Right-handed 310
Helix 26
26
K
193 197Right-handed 310
Helix 27
27
L
52 56Right-handed 310
Helix 28
28
L
124 130Right-handed alpha
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There are 57 sheets in PDB entry 4LVH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 76first strand
Strand 2
A
108 109anti-parallel
Strand 3
A
253 259anti-parallel
Strand 4
A
172 181anti-parallel
Strand 5
A
113 115first strand
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 95first strand
Strand 2
A
226 234parallel
Strand 3
A
172 181anti-parallel
Strand 4
A
253 259anti-parallel
Strand 5
A
248 251first strand
Strand 6
A
148 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
199 201first strand
Strand 2
A
208 210anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 4first strand
Strand 2
B
23 24anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 19first strand
Strand 2
B
80 82anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 48first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
116 117anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 72first strand
Strand 2
B
77 78anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 132first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
187 189anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
143 144first strand
Strand 2
B
192 193anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 161first strand
Strand 2
B
205 208anti-parallel
Strand 3
B
213 216anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
176 177first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
11 12first strand
Strand 2
C
108 109parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
19 23first strand
Strand 2
C
73 78anti-parallel
Strand 3
C
65 68anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
56 57first strand
Strand 2
C
45 52anti-parallel
Strand 3
C
37 42anti-parallel
Strand 4
C
89 90anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 138first strand
Strand 2
C
177 183anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
147 151first strand
Strand 2
C
193 197anti-parallel
Strand 3
C
204 205anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
108 115first strand
Strand 2
D
253 259anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
137 138first strand
Strand 2
D
141 142anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
161 166first strand
Strand 2
D
239 244anti-parallel
Strand 3
D
199 202anti-parallel
Strand 4
D
208 210anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
226 234first strand
Strand 2
D
173 181anti-parallel
Strand 3
D
248 249anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 11first strand
Strand 2
E
115 119parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
33 38anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 11first strand
Strand 2
E
115 119parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
108 111anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 22first strand
Strand 2
E
77 82anti-parallel
Strand 3
E
71 72anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
128 132first strand
Strand 2
E
143 153anti-parallel
Strand 3
E
184 193anti-parallel
Strand 4
E
176 177anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
158 161first strand
Strand 2
E
205 208anti-parallel
Strand 3
E
213 215anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
18 21first strand
Strand 2
F
74 78anti-parallel
Strand 3
F
65 69anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
56 57first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
38 41anti-parallel
Strand 4
F
89 91anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
119 121first strand
Strand 2
F
132 138anti-parallel
Strand 3
F
176 183anti-parallel
Strand 4
F
165 166anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
147 151first strand
Strand 2
F
193 197anti-parallel
Strand 3
F
204 205anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
51 52first strand
Strand 2
G
80 81parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
93 95first strand
Strand 2
G
226 234parallel
Strand 3
G
172 181anti-parallel
Strand 4
G
253 259anti-parallel
Strand 5
G
108 115anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
93 95first strand
Strand 2
G
226 234parallel
Strand 3
G
172 181anti-parallel
Strand 4
G
248 251anti-parallel
Strand 5
G
148 150anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
133 137first strand
Strand 2
G
142 143anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
199 202first strand
Strand 2
G
207 210anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
5 6first strand
Strand 2
H
17 22anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 11first strand
Strand 2
H
115 119parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
33 38anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 11first strand
Strand 2
H
115 119parallel
Strand 3
H
91 99anti-parallel
Strand 4
H
107 109anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
128 130first strand
Strand 2
H
143 153anti-parallel
Strand 3
H
184 193anti-parallel
Strand 4
H
176 177anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
159 161first strand
Strand 2
H
205 207anti-parallel
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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
18 21first strand
Strand 2
I
75 78anti-parallel
Strand 3
I
66 68anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
56 57first strand
Strand 2
I
49 52anti-parallel
Strand 3
I
37 39anti-parallel
Strand 4
I
90 92anti-parallel
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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
118 119first strand
Strand 2
I
132 139anti-parallel
Strand 3
I
176 183anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
147 151first strand
Strand 2
I
193 197anti-parallel
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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
93 95first strand
Strand 2
J
226 231parallel
Strand 3
J
176 181anti-parallel
Strand 4
J
248 251anti-parallel
Strand 5
J
148 150anti-parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
108 114first strand
Strand 2
J
254 259anti-parallel
Strand 3
J
172 174anti-parallel
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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
161 165first strand
Strand 2
J
240 244anti-parallel
Strand 3
J
199 202anti-parallel
Strand 4
J
207 210anti-parallel
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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
10 11first strand
Strand 2
K
116 119parallel
Strand 3
K
91 99anti-parallel
Strand 4
K
33 38anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
10 11first strand
Strand 2
K
116 119parallel
Strand 3
K
91 99anti-parallel
Strand 4
K
107 108anti-parallel
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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
17 22first strand
Strand 2
K
77 82anti-parallel
Strand 3
K
70 72anti-parallel
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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
49 50first strand
Strand 2
K
57 58anti-parallel
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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
128 132first strand
Strand 2
K
147 151anti-parallel
Strand 3
K
188 189anti-parallel
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There are 3 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
159 160first strand
Strand 2
K
206 208anti-parallel
Strand 3
K
213 215anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
11 12first strand
Strand 2
L
108 109parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
20 23first strand
Strand 2
L
73 78anti-parallel
Strand 3
L
65 69anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
38 42first strand
Strand 2
L
45 51anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 121first strand
Strand 2
L
133 139anti-parallel
Strand 3
L
176 182anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
147 148first strand
Strand 2
L
196 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il