Analysis of interatomic Contacts of Structural Units in PDB entry:
4LVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LVO entry

There are 4 chains in PDB entry 4LVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 333LYS 668
B
 ASP 1ARG 212
C
 GLN 1PRO 219
P
 ARG 139ASP 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4LVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
339 342Right-handed 310
Helix 2
2
A
343 350Right-handed alpha
Helix 3
3
A
354 362Right-handed alpha
Helix 4
4
A
382 386Right-handed 310
Helix 5
5
A
389 394Right-handed alpha
Helix 6
6
A
427 438Right-handed alpha
Helix 7
7
A
469 482Right-handed alpha
Helix 8
8
A
497 510Right-handed alpha
Helix 9
9
A
530 535Right-handed 310
Helix 10
10
A
543 549Right-handed 310
Helix 11
11
A
604 623Right-handed alpha
Helix 12
12
A
627 638Right-handed alpha
Helix 13
13
A
643 646Right-handed 310
Helix 14
14
A
656 667Right-handed alpha
Helix 15
15
B
30 32Right-handed 310
Helix 16
16
B
80 84Right-handed 310
Helix 17
17
B
184 188Right-handed alpha
Helix 18
18
C
62 65Right-handed 310
Helix 19
19
C
87 91Right-handed 310
Helix 20
20
C
163 165Right-handed 310
Helix 21
21
C
193 198Right-handed alpha
Helix 22
22
P
155 158Right-handed 310
Helix 23
23
P
159 169Right-handed alpha
Helix 24
24
P
176 178Right-handed 310
Helix 25
25
P
190 204Right-handed alpha
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There are 16 sheets in PDB entry 4LVO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
454 459parallel
Strand 3
A
367 372parallel
Strand 4
A
486 489parallel
Strand 5
A
513 517parallel
Strand 6
A
553 561parallel
Strand 7
A
568 570anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
454 459parallel
Strand 3
A
367 372parallel
Strand 4
A
486 489parallel
Strand 5
A
513 517parallel
Strand 6
A
553 561parallel
Strand 7
A
583 586parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
P
213 216anti-parallel
Strand 3
A
491 492anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
598 602anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
653 655anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 68anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
103 107parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
103 107parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
98 99anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
130 140anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
160 164anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
145 151anti-parallel
Strand 3
B
192 199anti-parallel
Strand 4
B
206 211anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
114 118parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
46 53anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
142 152anti-parallel
Strand 3
C
181 191anti-parallel
Strand 4
C
170 172anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
142 152anti-parallel
Strand 3
C
181 191anti-parallel
Strand 4
C
176 178anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 161first strand
Strand 2
C
201 206anti-parallel
Strand 3
C
211 216anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
170 175first strand
Strand 2
P
180 185anti-parallel
Strand 3
P
140 144anti-parallel
Strand 4
P
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il