Analysis of interatomic Contacts of Structural Units in PDB entry:
4LW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LW8 entry

There are 2 chains in PDB entry 4LW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7ALA 314
B
 GLY 7ALA 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4LW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
65 77Right-handed alpha
Helix 4
4
A
95 115Right-handed alpha
Helix 5
5
A
128 133Right-handed 310
Helix 6
6
A
150 165Right-handed alpha
Helix 7
7
A
189 200Right-handed alpha
Helix 8
8
A
219 233Right-handed alpha
Helix 9
9
A
249 261Right-handed alpha
Helix 10
10
A
270 273Right-handed 310
Helix 11
11
A
285 293Right-handed alpha
Helix 12
12
A
299 314Right-handed alpha
Helix 13
13
B
20 33Right-handed alpha
Helix 14
14
B
50 54Right-handed 310
Helix 15
15
B
65 77Right-handed alpha
Helix 16
16
B
95 115Right-handed alpha
Helix 17
17
B
128 133Right-handed 310
Helix 18
18
B
150 165Right-handed alpha
Helix 19
19
B
189 200Right-handed alpha
Helix 20
20
B
219 233Right-handed alpha
Helix 21
21
B
249 261Right-handed alpha
Helix 22
22
B
270 273Right-handed 310
Helix 23
23
B
285 293Right-handed alpha
Helix 24
24
B
299 314Right-handed alpha
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There are 8 sheets in PDB entry 4LW8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
36 41parallel
Strand 3
A
12 16parallel
Strand 4
A
80 83parallel
Strand 5
A
122 126parallel
Strand 6
A
172 177parallel
Strand 7
A
238 241parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
280 283parallel
Strand 3
A
213 218parallel
Strand 4
A
179 181parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
280 283parallel
Strand 3
A
213 218parallel
Strand 4
A
246 248anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
265 268parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
36 41parallel
Strand 3
B
12 16parallel
Strand 4
B
80 83parallel
Strand 5
B
122 126parallel
Strand 6
B
172 177parallel
Strand 7
B
238 241parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
280 283parallel
Strand 3
B
213 218parallel
Strand 4
B
179 181parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
280 283parallel
Strand 3
B
213 218parallel
Strand 4
B
246 248anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
265 268parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il