Analysis of interatomic Contacts of Structural Units in PDB entry:
4M00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M00 entry

There is 1 chain in PDB entry 4M00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 251ASN 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4M00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
265 269Right-handed alpha
Helix 2
2
A
347 351Right-handed 310
Helix 3
3
A
374 378Right-handed 310
Helix 4
4
A
383 387Right-handed 310
Helix 5
5
A
455 462Right-handed alpha
Helix 6
6
A
529 536Right-handed alpha
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There are 11 sheets in PDB entry 4M00. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 454first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
429 435anti-parallel
Strand 4
A
310 317anti-parallel
Strand 5
A
482 494anti-parallel
Strand 6
A
303 305anti-parallel
Strand 7
A
466 474anti-parallel
Strand 8
A
331 337anti-parallel
Strand 9
A
360 365anti-parallel
Strand 10
A
392 398anti-parallel
Strand 11
A
417 418anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
295 300anti-parallel
Strand 3
A
466 474anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
360 365anti-parallel
Strand 6
A
392 398anti-parallel
Strand 7
A
404 406anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
482 494anti-parallel
Strand 3
A
284 288anti-parallel
Strand 4
A
277 279anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
496 503anti-parallel
Strand 3
A
565 573parallel
Strand 4
A
538 544anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 525first strand
Strand 2
A
557 559anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 370first strand
Strand 2
A
598 600anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
440 660parallel
Strand 3
A
635 645anti-parallel
Strand 4
A
607 612anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 386first strand
Strand 2
A
626 629anti-parallel
Strand 3
A
618 621anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 667first strand
Strand 2
A
688 689anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 676first strand
Strand 2
A
739 749parallel
Strand 3
A
724 733anti-parallel
Strand 4
A
697 701anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
505 718anti-parallel
Strand 3
A
707 710anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il