Analysis of interatomic Contacts of Structural Units in PDB entry:
4M01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4M01 entry

There are 4 chains in PDB entry 4M01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 253	ASP 573
B	ALA 253	ASP 573
C	ALA 253	VAL 574
D	ALA 253	VAL 574

There are 24 helices in PDB entry 4M01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	265	269	Right-handed alpha
Helix 2	2	A	347	351	Right-handed 310
Helix 3	3	A	374	378	Right-handed 310
Helix 4	4	A	383	387	Right-handed 310
Helix 5	5	A	455	462	Right-handed alpha
Helix 6	6	A	529	536	Right-handed alpha
Helix 7	7	B	265	269	Right-handed alpha
Helix 8	8	B	347	351	Right-handed 310
Helix 9	9	B	374	378	Right-handed 310
Helix 10	10	B	383	387	Right-handed 310
Helix 11	11	B	455	463	Right-handed alpha
Helix 12	12	B	529	536	Right-handed alpha
Helix 13	13	C	265	269	Right-handed alpha
Helix 14	14	C	347	351	Right-handed 310
Helix 15	15	C	374	378	Right-handed 310
Helix 16	16	C	383	387	Right-handed 310
Helix 17	17	C	455	463	Right-handed alpha
Helix 18	18	C	529	535	Right-handed alpha
Helix 19	19	D	265	269	Right-handed alpha
Helix 20	20	D	347	351	Right-handed 310
Helix 21	21	D	374	378	Right-handed 310
Helix 22	22	D	383	387	Right-handed 310
Helix 23	23	D	455	463	Right-handed alpha
Helix 24	24	D	529	535	Right-handed alpha

There are 20 sheets in PDB entry 4M01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	454	first strand
Strand 2	A	441	446	anti-parallel
Strand 3	A	429	435	anti-parallel
Strand 4	A	310	317	anti-parallel
Strand 5	A	482	494	anti-parallel
Strand 6	A	303	305	anti-parallel
Strand 7	A	466	474	anti-parallel
Strand 8	A	331	337	anti-parallel
Strand 9	A	360	365	anti-parallel
Strand 10	A	392	398	anti-parallel
Strand 11	A	417	418	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	466	474	anti-parallel
Strand 4	A	331	337	anti-parallel
Strand 5	A	360	365	anti-parallel
Strand 6	A	392	398	anti-parallel
Strand 7	A	404	406	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	482	494	anti-parallel
Strand 3	A	284	288	anti-parallel
Strand 4	A	277	279	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	517	first strand
Strand 2	A	496	503	anti-parallel
Strand 3	A	354	572	parallel
Strand 4	A	539	547	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	557	559	anti-parallel

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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	454	first strand
Strand 2	B	441	446	anti-parallel
Strand 3	B	429	435	anti-parallel
Strand 4	B	310	317	anti-parallel
Strand 5	B	482	494	anti-parallel
Strand 6	B	303	305	anti-parallel
Strand 7	B	466	474	anti-parallel
Strand 8	B	331	337	anti-parallel
Strand 9	B	360	365	anti-parallel
Strand 10	B	392	398	anti-parallel
Strand 11	B	417	418	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	466	474	anti-parallel
Strand 4	B	331	337	anti-parallel
Strand 5	B	360	365	anti-parallel
Strand 6	B	392	398	anti-parallel
Strand 7	B	404	406	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	482	494	anti-parallel
Strand 3	B	284	288	anti-parallel
Strand 4	B	277	279	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	517	first strand
Strand 2	B	496	503	anti-parallel
Strand 3	B	354	572	parallel
Strand 4	B	539	544	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	525	first strand
Strand 2	B	557	559	anti-parallel

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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	454	first strand
Strand 2	C	441	446	anti-parallel
Strand 3	C	429	435	anti-parallel
Strand 4	C	310	317	anti-parallel
Strand 5	C	482	494	anti-parallel
Strand 6	C	303	305	anti-parallel
Strand 7	C	466	474	anti-parallel
Strand 8	C	331	337	anti-parallel
Strand 9	C	360	365	anti-parallel
Strand 10	C	392	398	anti-parallel
Strand 11	C	417	418	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	274	first strand
Strand 2	C	295	300	anti-parallel
Strand 3	C	466	474	anti-parallel
Strand 4	C	331	337	anti-parallel
Strand 5	C	360	365	anti-parallel
Strand 6	C	392	398	anti-parallel
Strand 7	C	404	406	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	261	first strand
Strand 2	C	482	494	anti-parallel
Strand 3	C	284	288	anti-parallel
Strand 4	C	277	279	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	517	first strand
Strand 2	C	496	503	anti-parallel
Strand 3	C	565	572	parallel
Strand 4	C	539	544	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	525	first strand
Strand 2	C	557	559	anti-parallel

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There are 11 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	454	first strand
Strand 2	D	441	446	anti-parallel
Strand 3	D	429	435	anti-parallel
Strand 4	D	310	317	anti-parallel
Strand 5	D	482	494	anti-parallel
Strand 6	D	303	305	anti-parallel
Strand 7	D	466	474	anti-parallel
Strand 8	D	331	337	anti-parallel
Strand 9	D	360	365	anti-parallel
Strand 10	D	392	398	anti-parallel
Strand 11	D	417	418	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	295	300	anti-parallel
Strand 3	D	466	474	anti-parallel
Strand 4	D	331	337	anti-parallel
Strand 5	D	360	365	anti-parallel
Strand 6	D	392	398	anti-parallel
Strand 7	D	404	406	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	482	494	anti-parallel
Strand 3	D	284	288	anti-parallel
Strand 4	D	277	279	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	517	first strand
Strand 2	D	496	503	anti-parallel
Strand 3	D	565	572	parallel
Strand 4	D	539	544	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	557	559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4M01

Analysis of interatomic Contacts of Structural Units in PDB entry:
4M01