Analysis of interatomic Contacts of Structural Units in PDB entry:
4M08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M08 entry

There are 5 chains in PDB entry 4M08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 238
B
 ALA 1GLN 238
C
 ALA 1GLN 238
D
 ALA 1GLN 238
E
 ALA 1GLN 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 67 helices in PDB entry 4M08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
23 26Right-handed 310
Helix 3
3
A
29 47Right-handed alpha
Helix 4
4
A
75 87Right-handed alpha
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
110 114Right-handed 310
Helix 7
7
A
115 122Right-handed alpha
Helix 8
8
A
143 148Right-handed 310
Helix 9
9
A
149 165Right-handed alpha
Helix 10
10
A
166 168Right-handed 310
Helix 11
11
A
194 206Right-handed alpha
Helix 12
12
A
207 208Right-handed 310
Helix 13
13
A
209 212Right-handed 310
Helix 14
14
A
228 235Right-handed alpha
Helix 15
15
B
2 7Right-handed alpha
Helix 16
16
B
23 26Right-handed 310
Helix 17
17
B
29 47Right-handed alpha
Helix 18
18
B
75 87Right-handed alpha
Helix 19
19
B
89 94Right-handed alpha
Helix 20
20
B
110 114Right-handed 310
Helix 21
21
B
115 122Right-handed alpha
Helix 22
22
B
143 148Right-handed 310
Helix 23
23
B
149 165Right-handed alpha
Helix 24
24
B
166 168Right-handed 310
Helix 25
25
B
194 206Right-handed alpha
Helix 26
26
B
207 212Right-handed 310
Helix 27
27
B
228 236Right-handed alpha
Helix 28
28
C
2 9Right-handed alpha
Helix 29
29
C
23 26Right-handed 310
Helix 30
30
C
29 47Right-handed alpha
Helix 31
31
C
75 87Right-handed alpha
Helix 32
32
C
89 94Right-handed alpha
Helix 33
33
C
110 114Right-handed 310
Helix 34
34
C
115 122Right-handed alpha
Helix 35
35
C
143 148Right-handed 310
Helix 36
36
C
149 165Right-handed alpha
Helix 37
37
C
166 168Right-handed 310
Helix 38
38
C
194 206Right-handed alpha
Helix 39
39
C
207 212Right-handed 310
Helix 40
40
C
228 235Right-handed alpha
Helix 41
41
D
2 7Right-handed alpha
Helix 42
42
D
23 26Right-handed 310
Helix 43
43
D
29 47Right-handed alpha
Helix 44
44
D
75 87Right-handed alpha
Helix 45
45
D
89 94Right-handed alpha
Helix 46
46
D
110 114Right-handed 310
Helix 47
47
D
115 122Right-handed alpha
Helix 48
48
D
144 148Right-handed 310
Helix 49
49
D
149 165Right-handed alpha
Helix 50
50
D
166 168Right-handed 310
Helix 51
51
D
194 206Right-handed alpha
Helix 52
52
D
207 212Right-handed 310
Helix 53
53
D
228 235Right-handed alpha
Helix 54
54
E
2 7Right-handed alpha
Helix 55
55
E
23 26Right-handed 310
Helix 56
56
E
29 47Right-handed alpha
Helix 57
57
E
75 87Right-handed alpha
Helix 58
58
E
91 93Right-handed 310
Helix 59
59
E
110 114Right-handed 310
Helix 60
60
E
115 122Right-handed alpha
Helix 61
61
E
143 148Right-handed 310
Helix 62
62
E
149 165Right-handed alpha
Helix 63
63
E
166 168Right-handed 310
Helix 64
64
E
194 206Right-handed alpha
Helix 65
65
E
207 208Right-handed 310
Helix 66
66
E
209 212Right-handed 310
Helix 67
67
E
228 235Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4M08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
133 141anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
52 57anti-parallel
Strand 5
A
67 73anti-parallel
Strand 6
A
13 21anti-parallel
Strand 7
A
95 104anti-parallel
Strand 8
A
171 177anti-parallel
Strand 9
A
186 192anti-parallel
Strand 10
A
133 141anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
133 141anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
51 57anti-parallel
Strand 5
B
67 73anti-parallel
Strand 6
B
13 21anti-parallel
Strand 7
B
95 104anti-parallel
Strand 8
B
171 177anti-parallel
Strand 9
B
186 192anti-parallel
Strand 10
B
133 141anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
133 141anti-parallel
Strand 3
C
222 226anti-parallel
Strand 4
C
52 57anti-parallel
Strand 5
C
67 73anti-parallel
Strand 6
C
13 21anti-parallel
Strand 7
C
95 104anti-parallel
Strand 8
C
171 177anti-parallel
Strand 9
C
186 192anti-parallel
Strand 10
C
133 141anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
133 141anti-parallel
Strand 3
D
222 226anti-parallel
Strand 4
D
52 57anti-parallel
Strand 5
D
67 73anti-parallel
Strand 6
D
13 21anti-parallel
Strand 7
D
95 104anti-parallel
Strand 8
D
171 177anti-parallel
Strand 9
D
186 192anti-parallel
Strand 10
D
133 141anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
214 217first strand
Strand 2
E
133 141anti-parallel
Strand 3
E
222 226anti-parallel
Strand 4
E
51 57anti-parallel
Strand 5
E
67 73anti-parallel
Strand 6
E
13 21anti-parallel
Strand 7
E
95 104anti-parallel
Strand 8
E
172 177anti-parallel
Strand 9
E
186 192anti-parallel
Strand 10
E
133 141anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il