Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M0H entry

There are 2 chains in PDB entry 4M0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 121SER 336
B
 LEU 124SER 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4M0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
253 258Right-handed alpha
Helix 2
2
A
259 263Right-handed 310
Helix 3
3
A
272 284Right-handed alpha
Helix 4
4
A
307 320Right-handed alpha
Helix 5
5
B
253 258Right-handed alpha
Helix 6
6
B
259 263Right-handed 310
Helix 7
7
B
272 284Right-handed alpha
Helix 8
8
B
307 320Right-handed alpha
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There are 8 sheets in PDB entry 4M0H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
153 157anti-parallel
Strand 3
A
165 177anti-parallel
Strand 4
A
185 188parallel
Strand 5
A
193 196anti-parallel
Strand 6
A
221 225anti-parallel
Strand 7
A
228 232anti-parallel
Strand 8
B
228 232anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
221 224anti-parallel
Strand 3
B
193 196anti-parallel
Strand 4
B
185 188anti-parallel
Strand 5
B
165 177parallel
Strand 6
B
145 148anti-parallel
Strand 7
B
136 139anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
165 177anti-parallel
Strand 4
A
199 205anti-parallel
Strand 5
A
211 219anti-parallel
Strand 6
A
236 241anti-parallel
Strand 7
A
247 251anti-parallel
Strand 8
B
247 251anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 251first strand
Strand 2
B
236 241anti-parallel
Strand 3
B
211 219anti-parallel
Strand 4
B
199 205anti-parallel
Strand 5
B
165 177anti-parallel
Strand 6
B
153 157anti-parallel
Strand 7
B
125 129anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 271first strand
Strand 2
A
298 303anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
329 333parallel
Strand 3
A
322 326anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 271first strand
Strand 2
B
298 303anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
329 333parallel
Strand 3
B
322 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il