Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M0J entry

There are 2 chains in PDB entry 4M0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6MET 300
B
 ILE 6MET 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4M0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 38Right-handed alpha
Helix 2
2
A
58 73Right-handed alpha
Helix 3
3
A
80 95Right-handed alpha
Helix 4
4
A
95 100Right-handed alpha
Helix 5
5
A
141 148Right-handed alpha
Helix 6
6
A
169 182Right-handed alpha
Helix 7
7
A
218 236Right-handed alpha
Helix 8
8
A
246 253Right-handed alpha
Helix 9
9
A
282 300Right-handed alpha
Helix 10
10
B
32 38Right-handed alpha
Helix 11
11
B
58 73Right-handed alpha
Helix 12
12
B
80 95Right-handed alpha
Helix 13
13
B
95 100Right-handed alpha
Helix 14
14
B
141 148Right-handed alpha
Helix 15
15
B
169 182Right-handed alpha
Helix 16
16
B
227 237Right-handed alpha
Helix 17
17
B
246 252Right-handed alpha
Helix 18
18
B
282 300Right-handed alpha
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There are 7 sheets in PDB entry 4M0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
105 112anti-parallel
Strand 5
A
40 50anti-parallel
Strand 6
A
53 56anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
B
27 29anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
264 271parallel
Strand 5
A
255 260anti-parallel
Strand 6
A
202 207anti-parallel
Strand 7
A
210 213anti-parallel
Strand 8
A
240 242parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
264 271parallel
Strand 5
A
274 275anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
9 14anti-parallel
Strand 3
B
129 136anti-parallel
Strand 4
B
105 112anti-parallel
Strand 5
B
40 50anti-parallel
Strand 6
B
53 56anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
149 155parallel
Strand 4
B
264 271parallel
Strand 5
B
255 260anti-parallel
Strand 6
B
202 207anti-parallel
Strand 7
B
210 213anti-parallel
Strand 8
B
240 242parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
149 155parallel
Strand 4
B
264 271parallel
Strand 5
B
274 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il