Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M0K entry

There are 4 chains in PDB entry 4M0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5LEU 177
B
 THR 4LEU 177
C
 ASN 2LEU 177
D
 ASN 2LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4M0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
35 48Right-handed alpha
Helix 4
4
A
49 51Right-handed 310
Helix 5
5
A
62 76Right-handed alpha
Helix 6
6
A
130 143Right-handed alpha
Helix 7
7
A
158 165Right-handed 310
Helix 8
8
B
5 13Right-handed alpha
Helix 9
9
B
29 35Right-handed alpha
Helix 10
10
B
35 48Right-handed alpha
Helix 11
11
B
62 76Right-handed alpha
Helix 12
12
B
130 143Right-handed alpha
Helix 13
13
B
160 165Right-handed alpha
Helix 14
14
C
3 13Right-handed alpha
Helix 15
15
C
29 35Right-handed alpha
Helix 16
16
C
35 48Right-handed alpha
Helix 17
17
C
49 51Right-handed 310
Helix 18
18
C
62 76Right-handed alpha
Helix 19
19
C
130 143Right-handed alpha
Helix 20
20
C
158 165Right-handed 310
Helix 21
21
D
3 13Right-handed alpha
Helix 22
22
D
29 35Right-handed alpha
Helix 23
23
D
35 48Right-handed alpha
Helix 24
24
D
49 51Right-handed 310
Helix 25
25
D
62 77Right-handed alpha
Helix 26
26
D
130 143Right-handed alpha
Helix 27
27
D
160 165Right-handed alpha
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There are 9 sheets in PDB entry 4M0K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
25 28anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
57 61parallel
Strand 5
A
119 127parallel
Strand 6
A
146 156parallel
Strand 7
A
171 177parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
25 28anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 99first strand
Strand 2
B
104 110anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
57 61parallel
Strand 5
B
119 127parallel
Strand 6
B
146 156parallel
Strand 7
B
171 177parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
25 28anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 99first strand
Strand 2
C
104 110anti-parallel
Strand 3
C
79 85anti-parallel
Strand 4
C
57 61parallel
Strand 5
C
119 127parallel
Strand 6
C
146 156parallel
Strand 7
C
171 177parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 16first strand
Strand 2
D
26 28anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 96first strand
Strand 2
D
107 110anti-parallel
Strand 3
D
79 85anti-parallel
Strand 4
D
57 61parallel
Strand 5
D
119 127parallel
Strand 6
D
146 156parallel
Strand 7
D
171 177parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
103 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il