Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4M0L entry

There are 6 chains in PDB entry 4M0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 415
B	ALA 2	ILE 415
C	ALA 2	ILE 415
D	ALA 2	ILE 415
E	ALA 2	ILE 415
F	ALA 2	ILE 415

There are 45 helices in PDB entry 4M0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	31	Right-handed alpha
Helix 2	2	A	96	106	Right-handed alpha
Helix 3	3	A	126	139	Right-handed alpha
Helix 4	4	A	150	154	Right-handed 310
Helix 5	5	A	157	171	Right-handed alpha
Helix 6	6	A	173	178	Right-handed 310
Helix 7	7	A	190	202	Right-handed alpha
Helix 8	8	A	302	307	Right-handed alpha
Helix 9	9	B	21	31	Right-handed alpha
Helix 10	10	B	74	78	Right-handed 310
Helix 11	11	B	96	106	Right-handed alpha
Helix 12	12	B	126	139	Right-handed alpha
Helix 13	13	B	150	154	Right-handed 310
Helix 14	14	B	155	171	Right-handed alpha
Helix 15	15	B	190	202	Right-handed alpha
Helix 16	16	B	302	307	Right-handed alpha
Helix 17	17	B	308	310	Right-handed 310
Helix 18	18	C	21	31	Right-handed alpha
Helix 19	19	C	74	78	Right-handed 310
Helix 20	20	C	96	106	Right-handed alpha
Helix 21	21	C	126	140	Right-handed alpha
Helix 22	22	C	155	171	Right-handed alpha
Helix 23	23	C	190	202	Right-handed alpha
Helix 24	24	C	302	307	Right-handed alpha
Helix 25	25	D	21	31	Right-handed alpha
Helix 26	26	D	96	107	Right-handed alpha
Helix 27	27	D	126	140	Right-handed alpha
Helix 28	28	D	150	154	Right-handed 310
Helix 29	29	D	155	171	Right-handed alpha
Helix 30	30	D	190	202	Right-handed alpha
Helix 31	31	D	229	233	Right-handed 310
Helix 32	32	D	302	306	Right-handed 310
Helix 33	33	E	21	31	Right-handed alpha
Helix 34	34	E	96	106	Right-handed alpha
Helix 35	35	E	126	140	Right-handed alpha
Helix 36	36	E	150	154	Right-handed 310
Helix 37	37	E	157	171	Right-handed alpha
Helix 38	38	E	190	202	Right-handed alpha
Helix 39	39	E	302	307	Right-handed 310
Helix 40	40	F	21	30	Right-handed alpha
Helix 41	41	F	96	107	Right-handed alpha
Helix 42	42	F	126	140	Right-handed alpha
Helix 43	43	F	155	171	Right-handed alpha
Helix 44	44	F	191	202	Right-handed alpha
Helix 45	45	F	302	307	Right-handed alpha

There are 24 sheets in PDB entry 4M0L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	50	58	anti-parallel
Strand 3	A	84	93	anti-parallel
Strand 4	A	10	16	parallel
Strand 5	A	114	119	parallel
Strand 6	A	144	149	parallel
Strand 7	A	180	182	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	267	281	anti-parallel
Strand 3	A	295	299	anti-parallel
Strand 4	A	237	244	anti-parallel
Strand 5	A	214	221	anti-parallel
Strand 6	A	315	318	anti-parallel
Strand 7	A	252	262	anti-parallel
Strand 8	A	267	281	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	288	289	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	335	first strand
Strand 2	A	377	387	anti-parallel
Strand 3	A	366	373	anti-parallel
Strand 4	A	356	360	anti-parallel
Strand 5	A	394	401	anti-parallel
Strand 6	A	404	413	anti-parallel
Strand 7	A	325	335	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	10	16	parallel
Strand 5	B	114	119	parallel
Strand 6	B	144	149	parallel
Strand 7	B	180	182	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	275	first strand
Strand 2	B	252	263	anti-parallel
Strand 3	B	315	318	anti-parallel
Strand 4	B	214	221	anti-parallel
Strand 5	B	237	244	anti-parallel
Strand 6	B	295	298	anti-parallel
Strand 7	B	278	280	anti-parallel
Strand 8	B	285	286	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	288	289	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	335	first strand
Strand 2	B	377	387	anti-parallel
Strand 3	B	366	373	anti-parallel
Strand 4	B	356	360	anti-parallel
Strand 5	B	393	401	anti-parallel
Strand 6	B	404	414	anti-parallel
Strand 7	B	325	335	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	50	58	anti-parallel
Strand 3	C	84	93	anti-parallel
Strand 4	C	10	15	parallel
Strand 5	C	113	119	parallel
Strand 6	C	144	149	parallel
Strand 7	C	181	182	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	275	first strand
Strand 2	C	252	262	anti-parallel
Strand 3	C	315	318	anti-parallel
Strand 4	C	214	221	anti-parallel
Strand 5	C	237	244	anti-parallel
Strand 6	C	295	298	anti-parallel
Strand 7	C	278	281	anti-parallel
Strand 8	C	284	286	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	288	289	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	335	first strand
Strand 2	C	377	387	anti-parallel
Strand 3	C	366	370	anti-parallel
Strand 4	C	356	360	anti-parallel
Strand 5	C	395	401	anti-parallel
Strand 6	C	404	414	anti-parallel
Strand 7	C	325	335	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	50	58	anti-parallel
Strand 3	D	84	93	anti-parallel
Strand 4	D	10	15	parallel
Strand 5	D	113	119	parallel
Strand 6	D	144	149	parallel
Strand 7	D	181	182	parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	274	first strand
Strand 2	D	253	263	anti-parallel
Strand 3	D	315	318	anti-parallel
Strand 4	D	214	221	anti-parallel
Strand 5	D	237	244	anti-parallel
Strand 6	D	295	298	anti-parallel
Strand 7	D	278	281	anti-parallel
Strand 8	D	284	286	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	288	289	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	368	first strand
Strand 2	D	357	360	anti-parallel
Strand 3	D	393	401	anti-parallel
Strand 4	D	404	413	anti-parallel
Strand 5	D	325	335	anti-parallel
Strand 6	D	378	387	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	50	58	anti-parallel
Strand 3	E	84	93	anti-parallel
Strand 4	E	10	16	parallel
Strand 5	E	113	119	parallel
Strand 6	E	144	149	parallel
Strand 7	E	180	181	parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	221	first strand
Strand 2	E	237	244	anti-parallel
Strand 3	E	294	299	anti-parallel
Strand 4	E	266	281	anti-parallel
Strand 5	E	252	263	anti-parallel
Strand 6	E	315	318	anti-parallel
Strand 7	E	214	221	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	248	first strand
Strand 2	E	288	289	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	335	first strand
Strand 2	E	378	387	anti-parallel
Strand 3	E	364	373	anti-parallel
Strand 4	E	356	361	anti-parallel
Strand 5	E	393	401	anti-parallel
Strand 6	E	404	414	anti-parallel
Strand 7	E	325	335	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	58	first strand
Strand 2	F	84	93	anti-parallel
Strand 3	F	10	15	parallel
Strand 4	F	113	119	parallel
Strand 5	F	144	149	parallel
Strand 6	F	181	182	parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	285	first strand
Strand 2	F	266	281	anti-parallel
Strand 3	F	295	299	anti-parallel
Strand 4	F	237	244	anti-parallel
Strand 5	F	214	221	anti-parallel
Strand 6	F	315	318	anti-parallel
Strand 7	F	252	263	anti-parallel
Strand 8	F	266	281	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	288	289	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	335	first strand
Strand 2	F	404	411	anti-parallel
Strand 3	F	395	401	anti-parallel
Strand 4	F	356	360	anti-parallel
Strand 5	F	366	373	anti-parallel
Strand 6	F	377	387	anti-parallel
Strand 7	F	325	332	anti-parallel
Strand 8	F	413	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4M0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0L