Analysis of interatomic Contacts of Structural Units in PDB entry:
4M0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M0M entry

There is 1 chain in PDB entry 4M0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10LYS 737
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 4M0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
89 105Right-handed alpha
Helix 3
3
A
111 130Right-handed alpha
Helix 4
4
A
144 161Right-handed alpha
Helix 5
5
A
182 186Right-handed alpha
Helix 6
6
A
236 240Right-handed 310
Helix 7
7
A
244 247Right-handed 310
Helix 8
8
A
248 265Right-handed alpha
Helix 9
9
A
295 309Right-handed alpha
Helix 10
10
A
309 315Right-handed alpha
Helix 11
11
A
328 332Right-handed 310
Helix 12
12
A
341 352Right-handed alpha
Helix 13
13
A
352 361Right-handed alpha
Helix 14
14
A
369 383Right-handed alpha
Helix 15
15
A
386 397Right-handed alpha
Helix 16
16
A
403 408Right-handed alpha
Helix 17
17
A
429 449Right-handed alpha
Helix 18
18
A
453 471Right-handed alpha
Helix 19
19
A
474 496Right-handed alpha
Helix 20
20
A
500 507Right-handed alpha
Helix 21
21
A
512 531Right-handed alpha
Helix 22
22
A
535 554Right-handed alpha
Helix 23
23
A
559 579Right-handed alpha
Helix 24
24
A
583 597Right-handed alpha
Helix 25
25
A
608 620Right-handed alpha
Helix 26
26
A
628 657Right-handed alpha
Helix 27
27
A
666 686Right-handed alpha
Helix 28
28
A
691 709Right-handed alpha
Helix 29
29
A
720 734Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4M0M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
15 20parallel
Strand 3
A
137 143parallel
Strand 4
A
165 171parallel
Strand 5
A
192 200parallel
Strand 6
A
225 231parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
217 218parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
284 288anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il