Analysis of interatomic Contacts of Structural Units in PDB entry:
4M17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4M17 entry

There are 12 chains in PDB entry 4M17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 216	PHE 355
B	LEU 214	PHE 355
C	GLU 212	PHE 355
D	GLY 216	PHE 355
E	GLY 216	PHE 355
F	GLN 215	PHE 355
G	GLY 216	PHE 355
H	LEU 214	PHE 355
I	GLY 216	PHE 355
J	GLY 216	PHE 355
K	GLN 217	PHE 355
L	VAL 218	PHE 355

There are 48 helices in PDB entry 4M17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	217	234	Right-handed alpha
Helix 2	2	A	253	264	Right-handed alpha
Helix 3	3	A	273	288	Right-handed alpha
Helix 4	4	A	324	328	Right-handed 310
Helix 5	5	B	215	234	Right-handed alpha
Helix 6	6	B	253	264	Right-handed alpha
Helix 7	7	B	273	288	Right-handed alpha
Helix 8	8	B	324	328	Right-handed 310
Helix 9	9	C	218	234	Right-handed alpha
Helix 10	10	C	253	264	Right-handed alpha
Helix 11	11	C	273	288	Right-handed alpha
Helix 12	12	C	324	328	Right-handed 310
Helix 13	13	D	218	234	Right-handed alpha
Helix 14	14	D	253	264	Right-handed alpha
Helix 15	15	D	273	288	Right-handed alpha
Helix 16	16	D	324	328	Right-handed 310
Helix 17	17	E	217	234	Right-handed alpha
Helix 18	18	E	253	264	Right-handed alpha
Helix 19	19	E	273	288	Right-handed alpha
Helix 20	20	E	324	328	Right-handed 310
Helix 21	21	F	216	234	Right-handed alpha
Helix 22	22	F	253	264	Right-handed alpha
Helix 23	23	F	273	288	Right-handed alpha
Helix 24	24	F	324	328	Right-handed 310
Helix 25	25	G	218	233	Right-handed alpha
Helix 26	26	G	253	264	Right-handed alpha
Helix 27	27	G	273	288	Right-handed alpha
Helix 28	28	G	324	328	Right-handed 310
Helix 29	29	H	215	233	Right-handed alpha
Helix 30	30	H	253	264	Right-handed alpha
Helix 31	31	H	273	288	Right-handed alpha
Helix 32	32	H	324	328	Right-handed 310
Helix 33	33	I	217	234	Right-handed alpha
Helix 34	34	I	253	264	Right-handed alpha
Helix 35	35	I	273	288	Right-handed alpha
Helix 36	36	I	324	328	Right-handed 310
Helix 37	37	J	217	234	Right-handed alpha
Helix 38	38	J	253	264	Right-handed alpha
Helix 39	39	J	273	288	Right-handed alpha
Helix 40	40	J	324	328	Right-handed 310
Helix 41	41	K	218	234	Right-handed alpha
Helix 42	42	K	253	264	Right-handed alpha
Helix 43	43	K	273	288	Right-handed alpha
Helix 44	44	K	324	328	Right-handed 310
Helix 45	45	L	219	234	Right-handed alpha
Helix 46	46	L	253	264	Right-handed alpha
Helix 47	47	L	273	288	Right-handed alpha
Helix 48	48	L	324	328	Right-handed 310

There are 24 sheets in PDB entry 4M17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	243	252	anti-parallel
Strand 3	A	349	354	anti-parallel
Strand 4	A	267	268	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	340	343	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	243	252	anti-parallel
Strand 3	B	349	354	anti-parallel
Strand 4	B	267	268	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	340	343	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	243	252	anti-parallel
Strand 3	C	349	354	anti-parallel
Strand 4	C	267	268	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	296	first strand
Strand 2	C	331	334	anti-parallel
Strand 3	C	340	343	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	243	252	anti-parallel
Strand 3	D	349	354	anti-parallel
Strand 4	D	267	268	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	331	334	anti-parallel
Strand 3	D	340	343	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	240	first strand
Strand 2	E	243	252	anti-parallel
Strand 3	E	349	354	anti-parallel
Strand 4	E	267	268	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	296	first strand
Strand 2	E	331	334	anti-parallel
Strand 3	E	340	343	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	240	first strand
Strand 2	F	243	252	anti-parallel
Strand 3	F	349	354	anti-parallel
Strand 4	F	267	268	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	296	first strand
Strand 2	F	331	334	anti-parallel
Strand 3	F	340	343	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	237	240	first strand
Strand 2	G	243	252	anti-parallel
Strand 3	G	349	354	anti-parallel
Strand 4	G	267	268	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	296	first strand
Strand 2	G	331	334	anti-parallel
Strand 3	G	340	343	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	237	240	first strand
Strand 2	H	243	252	anti-parallel
Strand 3	H	349	354	anti-parallel
Strand 4	H	267	268	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	296	first strand
Strand 2	H	331	334	anti-parallel
Strand 3	H	340	343	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	237	240	first strand
Strand 2	I	243	252	anti-parallel
Strand 3	I	349	354	anti-parallel
Strand 4	I	267	268	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	291	296	first strand
Strand 2	I	331	334	anti-parallel
Strand 3	I	340	343	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	237	240	first strand
Strand 2	J	243	252	anti-parallel
Strand 3	J	349	354	anti-parallel
Strand 4	J	267	268	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	296	first strand
Strand 2	J	331	334	anti-parallel
Strand 3	J	340	343	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	237	240	first strand
Strand 2	K	243	252	anti-parallel
Strand 3	K	349	354	anti-parallel
Strand 4	K	267	268	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	291	296	first strand
Strand 2	K	331	334	anti-parallel
Strand 3	K	340	343	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	237	240	first strand
Strand 2	L	243	252	anti-parallel
Strand 3	L	349	354	anti-parallel
Strand 4	L	267	268	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	296	first strand
Strand 2	L	331	334	anti-parallel
Strand 3	L	340	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4M17

Analysis of interatomic Contacts of Structural Units in PDB entry:
4M17