Analysis of interatomic Contacts of Structural Units in PDB entry:
4M1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M1B entry

There are 2 chains in PDB entry 4M1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47THR 246
B
 LYS 47THR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4M1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 82Right-handed alpha
Helix 2
2
A
92 99Right-handed alpha
Helix 3
3
A
99 110Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
127 145Right-handed alpha
Helix 6
6
A
155 159Right-handed 310
Helix 7
7
A
161 171Right-handed alpha
Helix 8
8
A
183 187Right-handed 310
Helix 9
9
A
189 200Right-handed alpha
Helix 10
10
A
217 232Right-handed alpha
Helix 11
11
A
238 245Right-handed alpha
Helix 12
12
B
71 82Right-handed alpha
Helix 13
13
B
92 97Right-handed alpha
Helix 14
14
B
99 109Right-handed alpha
Helix 15
15
B
122 126Right-handed 310
Helix 16
16
B
127 145Right-handed alpha
Helix 17
17
B
155 159Right-handed 310
Helix 18
18
B
161 171Right-handed alpha
Helix 19
19
B
183 187Right-handed 310
Helix 20
20
B
189 199Right-handed alpha
Helix 21
21
B
217 233Right-handed alpha
Helix 22
22
B
238 246Right-handed alpha
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There are 6 sheets in PDB entry 4M1B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
174 176parallel
Strand 3
A
152 153parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
88 91parallel
Strand 3
A
58 65parallel
Strand 4
A
206 210parallel
Strand 5
A
180 181parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
88 91parallel
Strand 3
A
58 65parallel
Strand 4
A
235 236parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
174 176parallel
Strand 3
B
152 153parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
88 91parallel
Strand 3
B
58 65parallel
Strand 4
B
206 210parallel
Strand 5
B
180 181parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
88 91parallel
Strand 3
B
58 65parallel
Strand 4
B
235 236parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il