Analysis of interatomic Contacts of Structural Units in PDB entry:
4M1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M1V entry

There is 1 chain in PDB entry 4M1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4M1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
65 76Right-handed alpha
Helix 5
5
A
76 81Right-handed alpha
Helix 6
6
A
108 117Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
144 158Right-handed alpha
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
A
189 200Right-handed alpha
Helix 12
12
A
219 225Right-handed 310
Helix 13
13
A
248 251Right-handed 310
Helix 14
14
A
252 258Right-handed alpha
Helix 15
15
A
263 267Right-handed 310
Helix 16
16
A
269 274Right-handed 310
Helix 17
17
A
309 324Right-handed alpha
Helix 18
18
A
330 337Right-handed alpha
Helix 19
19
A
343 355Right-handed alpha
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There are 5 sheets in PDB entry 4M1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
4 6parallel
Strand 3
A
57 60parallel
Strand 4
A
296 304anti-parallel
Strand 5
A
83 92anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
231 232parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
136 140parallel
Strand 3
A
207 208parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
240 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
285 287parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il