Analysis of interatomic Contacts of Structural Units in PDB entry:
4M29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M29 entry

There is 1 chain in PDB entry 4M29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8PRO 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4M29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 27Right-handed 310
Helix 2
2
A
34 39Right-handed alpha
Helix 3
3
A
40 55Right-handed alpha
Helix 4
4
A
66 70Right-handed 310
Helix 5
5
A
83 96Right-handed alpha
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
129 155Right-handed alpha
Helix 8
8
A
170 173Right-handed 310
Helix 9
9
A
174 193Right-handed alpha
Helix 10
10
A
204 207Right-handed 310
Helix 11
11
A
208 220Right-handed alpha
Helix 12
12
A
255 269Right-handed alpha
Helix 13
13
A
289 293Right-handed 310
Helix 14
14
A
294 295Right-handed 310
Helix 15
15
A
296 309Right-handed alpha
Helix 16
16
A
348 359Right-handed alpha
Helix 17
17
A
438 446Right-handed alpha
Helix 18
18
A
453 464Right-handed alpha
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There are 5 sheets in PDB entry 4M29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
413 418parallel
Strand 3
A
480 484anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
58 61parallel
Strand 3
A
99 104parallel
Strand 4
A
157 160parallel
Strand 5
A
197 203parallel
Strand 6
A
225 231parallel
Strand 7
A
276 282parallel
Strand 8
A
314 317parallel
Strand 9
A
29 31parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
79 81anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
123 124anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
380 386anti-parallel
Strand 4
A
491 497anti-parallel
Strand 5
A
426 432anti-parallel
Strand 6
A
470 473anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il