Analysis of interatomic Contacts of Structural Units in PDB entry:
4M2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M2B entry

There is 1 chain in PDB entry 4M2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6PRO 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4M2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
48 52Right-handed 310
Helix 4
4
A
62 64Right-handed 310
Helix 5
5
A
69 75Right-handed alpha
Helix 6
6
A
86 90Right-handed 310
Helix 7
7
A
94 97Right-handed 310
Helix 8
8
A
106 121Right-handed alpha
Helix 9
9
A
135 147Right-handed alpha
Helix 10
10
A
147 152Right-handed alpha
Helix 11
11
A
181 184Right-handed 310
Helix 12
12
A
190 192Right-handed 310
Helix 13
13
A
193 201Right-handed alpha
Helix 14
14
A
202 210Right-handed alpha
Helix 15
15
A
228 239Right-handed alpha
Helix 16
16
A
286 288Right-handed 310
Helix 17
17
A
289 291Right-handed 310
Helix 18
18
A
292 297Right-handed alpha
Helix 19
19
A
314 324Right-handed alpha
Helix 20
20
A
355 363Right-handed 310
Helix 21
21
A
372 376Right-handed 310
Helix 22
22
A
381 390Right-handed alpha
Helix 23
23
A
405 408Right-handed 310
Helix 24
24
A
417 422Right-handed alpha
Helix 25
25
A
423 431Right-handed alpha
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There are 9 sheets in PDB entry 4M2B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
366 370parallel
Strand 3
A
242 248parallel
Strand 4
A
304 313anti-parallel
Strand 5
A
214 218anti-parallel
Strand 6
A
76 81parallel
Strand 7
A
126 131parallel
Strand 8
A
159 161parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
186 187anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
333 338anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
280 284anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
401 403anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 416first strand
Strand 2
A
441 447parallel
Strand 3
A
457 465parallel
Strand 4
A
480 482parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 416first strand
Strand 2
A
441 447parallel
Strand 3
A
457 465parallel
Strand 4
A
485 486parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
473 474parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il