Analysis of interatomic Contacts of Structural Units in PDB entry:
4M40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M40 entry

There are 6 chains in PDB entry 4M40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1LEU 341
B
 PHE 2ILE 172
C
 ASP 1LEU 341
D
 PHE 2ASN 171
E
 ASP 1LEU 341
F
 PHE 2ILE 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4M40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 68Right-handed alpha
Helix 2
2
A
98 102Right-handed 310
Helix 3
3
A
103 105Right-handed 310
Helix 4
4
A
106 112Right-handed alpha
Helix 5
5
A
194 203Right-handed alpha
Helix 6
6
B
3 8Right-handed alpha
Helix 7
7
B
37 57Right-handed alpha
Helix 8
8
B
74 127Right-handed alpha
Helix 9
9
B
145 154Right-handed alpha
Helix 10
10
B
158 163Right-handed 310
Helix 11
11
C
61 68Right-handed alpha
Helix 12
12
C
98 102Right-handed 310
Helix 13
13
C
103 105Right-handed 310
Helix 14
14
C
106 112Right-handed alpha
Helix 15
15
C
194 203Right-handed alpha
Helix 16
16
D
3 8Right-handed alpha
Helix 17
17
D
37 57Right-handed alpha
Helix 18
18
D
74 127Right-handed alpha
Helix 19
19
D
145 154Right-handed alpha
Helix 20
20
D
158 163Right-handed 310
Helix 21
21
E
61 68Right-handed alpha
Helix 22
22
E
98 102Right-handed 310
Helix 23
23
E
103 105Right-handed 310
Helix 24
24
E
106 112Right-handed alpha
Helix 25
25
E
194 203Right-handed alpha
Helix 26
26
F
3 8Right-handed alpha
Helix 27
27
F
37 57Right-handed alpha
Helix 28
28
F
74 110Right-handed alpha
Helix 29
29
F
110 127Right-handed alpha
Helix 30
30
F
145 154Right-handed alpha
Helix 31
31
F
158 163Right-handed 310
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There are 30 sheets in PDB entry 4M40. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
22 27anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
B
137 139anti-parallel
Strand 5
B
131 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
23 26anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
327 329anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
306 307parallel
Strand 3
A
320 321parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
289 290parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
81 84parallel
Strand 3
A
278 281parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
264 267anti-parallel
Strand 5
A
156 161anti-parallel
Strand 6
A
135 138anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
242 250anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
217 222anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
292 294anti-parallel
Strand 3
A
314 316anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 36first strand
Strand 2
D
22 27anti-parallel
Strand 3
C
2 7anti-parallel
Strand 4
D
137 139anti-parallel
Strand 5
D
131 132anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
23 26anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
327 329anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
306 307parallel
Strand 3
C
320 321parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
289 290parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
81 84parallel
Strand 3
C
278 281parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
271 274anti-parallel
Strand 3
C
183 192anti-parallel
Strand 4
C
264 267anti-parallel
Strand 5
C
156 161anti-parallel
Strand 6
C
135 138anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
271 274anti-parallel
Strand 3
C
183 192anti-parallel
Strand 4
C
242 250anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 174first strand
Strand 2
C
256 260anti-parallel
Strand 3
C
209 214anti-parallel
Strand 4
C
217 222anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 300first strand
Strand 2
C
292 294anti-parallel
Strand 3
C
314 316anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 36first strand
Strand 2
F
22 27anti-parallel
Strand 3
E
2 7anti-parallel
Strand 4
F
137 139anti-parallel
Strand 5
F
131 132anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 17first strand
Strand 2
E
23 26anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 31first strand
Strand 2
E
327 329anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
306 307parallel
Strand 3
E
320 321parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
289 290parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
E
81 84parallel
Strand 3
E
278 281parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 119first strand
Strand 2
E
271 274anti-parallel
Strand 3
E
183 192anti-parallel
Strand 4
E
264 267anti-parallel
Strand 5
E
156 161anti-parallel
Strand 6
E
135 138anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 119first strand
Strand 2
E
271 274anti-parallel
Strand 3
E
183 192anti-parallel
Strand 4
E
242 250anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
170 174first strand
Strand 2
E
256 260anti-parallel
Strand 3
E
209 214anti-parallel
Strand 4
E
217 222anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
298 300first strand
Strand 2
E
292 294anti-parallel
Strand 3
E
314 316anti-parallel
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