Analysis of interatomic Contacts of Structural Units in PDB entry:
4M48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M48 entry

There are 3 chains in PDB entry 4M48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25ASP 599
L
 GLU 1GLU 214
H
 GLU 1ARG 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 4M48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
52 60Right-handed alpha
Helix 4
4
A
61 64Right-handed 310
Helix 5
5
A
65 76Right-handed alpha
Helix 6
6
A
76 92Right-handed alpha
Helix 7
7
A
94 103Right-handed alpha
Helix 8
8
A
107 124Right-handed alpha
Helix 9
9
A
124 138Right-handed alpha
Helix 10
10
A
211 219Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
236 255Right-handed alpha
Helix 13
13
A
257 269Right-handed alpha
Helix 14
14
A
270 286Right-handed alpha
Helix 15
15
A
288 298Right-handed alpha
Helix 16
16
A
300 305Right-handed 310
Helix 17
17
A
306 322Right-handed alpha
Helix 18
18
A
326 334Right-handed alpha
Helix 19
19
A
340 374Right-handed alpha
Helix 20
20
A
377 382Right-handed alpha
Helix 21
21
A
385 391Right-handed alpha
Helix 22
22
A
391 398Right-handed alpha
Helix 23
23
A
402 435Right-handed alpha
Helix 24
24
A
437 442Right-handed alpha
Helix 25
25
A
443 460Right-handed alpha
Helix 26
26
A
466 478Right-handed alpha
Helix 27
27
A
481 497Right-handed alpha
Helix 28
28
A
499 512Right-handed alpha
Helix 29
29
A
516 525Right-handed alpha
Helix 30
30
A
525 541Right-handed alpha
Helix 31
31
A
553 569Right-handed alpha
Helix 32
32
A
569 580Right-handed alpha
Helix 33
33
A
585 595Right-handed alpha
Helix 34
34
L
80 84Right-handed 310
Helix 35
35
L
122 129Right-handed alpha
Helix 36
36
L
184 189Right-handed alpha
Helix 37
37
H
28 32Right-handed 310
Helix 38
38
H
87 91Right-handed 310
Helix 39
39
H
162 164Right-handed 310
Helix 40
40
H
192 197Right-handed alpha
Helix 41
41
H
206 209Right-handed 310
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There are 12 sheets in PDB entry 4M48. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
209 210parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 547first strand
Strand 2
A
550 551anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
63 76anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 156first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
206 211anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
69 73anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
108 109anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
181 190anti-parallel
Strand 4
H
169 176anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
200 205anti-parallel
Strand 3
H
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il