Analysis of interatomic Contacts of Structural Units in PDB entry:
4M4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M4V entry

There are 2 chains in PDB entry 4M4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 22ASN 406
B
 ASP 23ASN 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4M4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed 310
Helix 2
2
A
104 108Right-handed 310
Helix 3
3
A
191 196Right-handed alpha
Helix 4
4
A
345 348Right-handed 310
Helix 5
5
A
396 402Right-handed alpha
Helix 6
6
B
104 108Right-handed 310
Helix 7
7
B
191 196Right-handed alpha
Helix 8
8
B
345 348Right-handed 310
Helix 9
9
B
396 402Right-handed alpha
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There are 16 sheets in PDB entry 4M4V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
369 376anti-parallel
Strand 4
A
354 363anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 65first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
112 115anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 129first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
189 190anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
161 162parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
237 242anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
281 282anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
286 293anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 304first strand
Strand 2
A
310 316anti-parallel
Strand 3
A
325 330anti-parallel
Strand 4
A
342 343anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
388 395anti-parallel
Strand 3
B
369 376anti-parallel
Strand 4
B
354 363anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 65first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
112 115anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 129first strand
Strand 2
B
135 143anti-parallel
Strand 3
B
172 178anti-parallel
Strand 4
B
189 190anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
161 162parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
225 230anti-parallel
Strand 4
B
237 242anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 254first strand
Strand 2
B
260 264anti-parallel
Strand 3
B
270 278anti-parallel
Strand 4
B
281 282anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 254first strand
Strand 2
B
260 264anti-parallel
Strand 3
B
270 278anti-parallel
Strand 4
B
286 293anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 304first strand
Strand 2
B
310 316anti-parallel
Strand 3
B
325 330anti-parallel
Strand 4
B
342 343anti-parallel
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