Analysis of interatomic Contacts of Structural Units in PDB entry:
4M55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M55 entry

There are 6 chains in PDB entry 4M55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 88ALA 399
B
 ARG 88ALA 399
C
 ARG 88ALA 399
D
 ARG 88LEU 395
E
 ARG 90MET 371
F
 GLY 95ASP 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4M55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 111Right-handed alpha
Helix 2
2
A
125 133Right-handed 310
Helix 3
3
A
171 194Right-handed alpha
Helix 4
4
A
204 206Right-handed 310
Helix 5
5
A
235 250Right-handed alpha
Helix 6
6
A
272 283Right-handed alpha
Helix 7
7
A
302 314Right-handed alpha
Helix 8
8
A
331 343Right-handed alpha
Helix 9
9
A
365 372Right-handed alpha
Helix 10
10
A
379 398Right-handed alpha
Helix 11
11
B
98 111Right-handed alpha
Helix 12
12
B
125 133Right-handed 310
Helix 13
13
B
171 194Right-handed alpha
Helix 14
14
B
204 206Right-handed 310
Helix 15
15
B
234 250Right-handed alpha
Helix 16
16
B
272 283Right-handed alpha
Helix 17
17
B
302 315Right-handed alpha
Helix 18
18
B
331 343Right-handed alpha
Helix 19
19
B
365 372Right-handed alpha
Helix 20
20
B
379 398Right-handed alpha
Helix 21
21
C
98 111Right-handed alpha
Helix 22
22
C
125 133Right-handed 310
Helix 23
23
C
171 194Right-handed alpha
Helix 24
24
C
204 206Right-handed 310
Helix 25
25
C
234 250Right-handed alpha
Helix 26
26
C
272 283Right-handed alpha
Helix 27
27
C
302 314Right-handed alpha
Helix 28
28
C
331 343Right-handed alpha
Helix 29
29
C
365 372Right-handed alpha
Helix 30
30
C
379 398Right-handed alpha
Helix 31
31
D
98 111Right-handed alpha
Helix 32
32
D
125 129Right-handed 310
Helix 33
33
D
171 194Right-handed alpha
Helix 34
34
D
204 206Right-handed 310
Helix 35
35
D
235 250Right-handed alpha
Helix 36
36
D
267 271Right-handed 310
Helix 37
37
D
272 284Right-handed alpha
Helix 38
38
D
302 314Right-handed alpha
Helix 39
39
D
331 343Right-handed alpha
Helix 40
40
D
365 373Right-handed alpha
Helix 41
41
D
379 395Right-handed alpha
Helix 42
42
E
98 111Right-handed alpha
Helix 43
43
E
125 133Right-handed 310
Helix 44
44
E
172 194Right-handed alpha
Helix 45
45
E
238 250Right-handed alpha
Helix 46
46
E
301 314Right-handed alpha
Helix 47
47
E
365 371Right-handed alpha
Helix 48
48
F
98 108Right-handed alpha
Helix 49
49
F
125 133Right-handed 310
Helix 50
50
F
171 193Right-handed alpha
Helix 51
51
F
238 250Right-handed alpha
Helix 52
52
F
272 282Right-handed alpha
Helix 53
53
F
303 314Right-handed alpha
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There are 17 sheets in PDB entry 4M55. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
114 119parallel
Strand 3
A
90 94parallel
Strand 4
A
155 158parallel
Strand 5
A
196 202parallel
Strand 6
A
253 258parallel
Strand 7
A
321 323parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
300 301parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
348 349parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
328 330anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 142first strand
Strand 2
B
114 119parallel
Strand 3
B
90 94parallel
Strand 4
B
155 158parallel
Strand 5
B
196 202parallel
Strand 6
B
253 258parallel
Strand 7
B
321 323parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
300 301parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
348 349parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 298first strand
Strand 2
B
328 330anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 142first strand
Strand 2
C
114 119parallel
Strand 3
C
90 94parallel
Strand 4
C
155 158parallel
Strand 5
C
196 202parallel
Strand 6
C
253 258parallel
Strand 7
C
321 323parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
300 301parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 289first strand
Strand 2
C
348 350parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
296 298first strand
Strand 2
C
328 330anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 141first strand
Strand 2
D
114 118parallel
Strand 3
D
90 94parallel
Strand 4
D
155 158parallel
Strand 5
D
196 202parallel
Strand 6
D
253 258parallel
Strand 7
D
321 323parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
261 262first strand
Strand 2
D
300 301parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
287 289first strand
Strand 2
D
348 350parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
296 298first strand
Strand 2
D
328 330anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
139 142first strand
Strand 2
E
115 119parallel
Strand 3
E
91 94parallel
Strand 4
E
155 158parallel
Strand 5
E
196 202parallel
Strand 6
E
253 258parallel
Strand 7
E
320 323parallel
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