Analysis of interatomic Contacts of Structural Units in PDB entry:
4M5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M5D entry

There are 2 chains in PDB entry 4M5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 81ASP 1237
B
 ILE 3ALA 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4M5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 115Right-handed alpha
Helix 2
2
A
117 137Right-handed alpha
Helix 3
3
A
145 155Right-handed alpha
Helix 4
4
A
168 172Right-handed 310
Helix 5
5
A
187 191Right-handed alpha
Helix 6
6
A
210 214Right-handed 310
Helix 7
7
A
222 246Right-handed alpha
Helix 8
8
A
247 250Right-handed 310
Helix 9
9
A
260 262Right-handed 310
Helix 10
10
A
285 288Right-handed 310
Helix 11
11
A
304 309Right-handed 310
Helix 12
12
A
329 339Right-handed alpha
Helix 13
13
A
341 356Right-handed alpha
Helix 14
14
A
358 373Right-handed alpha
Helix 15
15
A
389 401Right-handed alpha
Helix 16
16
A
417 432Right-handed alpha
Helix 17
17
A
481 500Right-handed alpha
Helix 18
18
A
506 512Right-handed alpha
Helix 19
19
A
518 523Right-handed alpha
Helix 20
20
A
535 537Right-handed 310
Helix 21
21
A
538 543Right-handed alpha
Helix 22
22
A
548 556Right-handed alpha
Helix 23
23
A
557 575Right-handed alpha
Helix 24
24
A
602 606Right-handed 310
Helix 25
25
A
639 650Right-handed alpha
Helix 26
26
A
676 690Right-handed alpha
Helix 27
27
A
698 707Right-handed alpha
Helix 28
28
A
715 719Right-handed 310
Helix 29
29
A
724 743Right-handed alpha
Helix 30
30
A
757 762Right-handed 310
Helix 31
31
A
795 818Right-handed alpha
Helix 32
32
A
858 870Right-handed alpha
Helix 33
33
A
874 890Right-handed alpha
Helix 34
34
A
891 904Right-handed alpha
Helix 35
35
A
908 923Right-handed alpha
Helix 36
36
A
930 944Right-handed alpha
Helix 37
37
A
953 968Right-handed alpha
Helix 38
38
A
1013 1031Right-handed alpha
Helix 39
39
A
1057 1079Right-handed alpha
Helix 40
40
A
1081 1089Right-handed alpha
Helix 41
41
A
1135 1143Right-handed 310
Helix 42
42
A
1144 1158Right-handed alpha
Helix 43
43
A
1168 1173Right-handed alpha
Helix 44
44
A
1188 1191Right-handed 310
Helix 45
45
A
1215 1228Right-handed alpha
Helix 46
46
B
46 50Right-handed 310
Helix 47
47
B
63 78Right-handed alpha
Helix 48
48
B
99 105Right-handed alpha
Helix 49
49
B
130 145Right-handed alpha
Helix 50
50
B
146 151Right-handed alpha
Helix 51
51
B
152 155Right-handed 310
Helix 52
52
B
164 171Right-handed alpha
Helix 53
53
B
176 189Right-handed alpha
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There are 9 sheets in PDB entry 4M5D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
290 297parallel
Strand 4
A
266 272anti-parallel
Strand 5
A
252 258anti-parallel
Strand 6
A
591 592anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
439 442anti-parallel
Strand 3
A
467 469parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 586first strand
Strand 2
A
612 619anti-parallel
Strand 3
A
525 530anti-parallel
Strand 4
A
695 697anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 633first strand
Strand 2
A
663 668anti-parallel
Strand 3
A
653 657anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 755first strand
Strand 2
A
779 786anti-parallel
Strand 3
A
849 855parallel
Strand 4
A
838 843anti-parallel
Strand 5
A
822 827anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 976first strand
Strand 2
A
1041 1042parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1161 1165first strand
Strand 2
A
1179 1186anti-parallel
Strand 3
A
1098 1103anti-parallel
Strand 4
A
1231 1236anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1194 1195first strand
Strand 2
A
1211 1214anti-parallel
Strand 3
A
1204 1206anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 19first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
52 56anti-parallel
Strand 4
B
123 128anti-parallel
Strand 5
B
84 88anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il