Analysis of interatomic Contacts of Structural Units in PDB entry:
4M5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M5T entry

There are 8 chains in PDB entry 4M5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67VAL 152
B
 GLU 156GLU 164
C
 GLY 67VAL 152
D
 GLU 156GLU 164
E
 GLY 67GLN 151
F
 GLU 156GLU 164
G
 GLY 67VAL 152
H
 GLU 156ARG 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4M5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 87Right-handed 310
Helix 2
2
A
129 133Right-handed 310
Helix 3
3
C
85 87Right-handed 310
Helix 4
4
C
129 133Right-handed 310
Helix 5
5
E
85 87Right-handed 310
Helix 6
6
E
129 133Right-handed 310
Helix 7
7
G
85 87Right-handed 310
Helix 8
8
G
129 133Right-handed 310
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There are 6 sheets in PDB entry 4M5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
134 137anti-parallel
Strand 5
B
161 163parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
97 106anti-parallel
Strand 4
A
113 123anti-parallel
Strand 5
C
113 123anti-parallel
Strand 6
C
97 106anti-parallel
Strand 7
C
89 94anti-parallel
Strand 8
D
161 162parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
74 80anti-parallel
Strand 3
C
142 148anti-parallel
Strand 4
C
134 137anti-parallel
Strand 5
D
157 158anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 70first strand
Strand 2
E
74 80anti-parallel
Strand 3
E
142 148anti-parallel
Strand 4
E
134 137anti-parallel
Strand 5
F
157 159anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
161 164first strand
Strand 2
E
89 94parallel
Strand 3
E
97 107anti-parallel
Strand 4
E
113 123anti-parallel
Strand 5
G
113 123anti-parallel
Strand 6
G
97 106anti-parallel
Strand 7
G
89 94anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
68 70first strand
Strand 2
G
74 80anti-parallel
Strand 3
G
142 148anti-parallel
Strand 4
G
134 137anti-parallel
Strand 5
H
157 159anti-parallel
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