Analysis of interatomic Contacts of Structural Units in PDB entry:
4M62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M62 entry

There are 6 chains in PDB entry 4M62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 1ARG 112
H
 GLN 1SER 113
M
 GLU 1ARG 112
I
 GLN 1SER 112
S
 ASN 7GLU 161
T
 ASN 7GLU 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4M62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
29 31Right-handed 310
Helix 2
2
L
79 83Right-handed 310
Helix 3
3
H
52 55Right-handed 310
Helix 4
4
H
73 75Right-handed 310
Helix 5
5
H
83 87Right-handed 310
Helix 6
6
M
29 31Right-handed 310
Helix 7
7
M
79 83Right-handed 310
Helix 8
8
I
52 55Right-handed 310
Helix 9
9
I
83 87Right-handed 310
Helix 10
10
S
15 17Right-handed 310
Helix 11
11
S
27 42Right-handed alpha
Helix 12
12
S
48 60Right-handed alpha
Helix 13
13
S
77 81Right-handed 310
Helix 14
14
S
119 121Right-handed 310
Helix 15
15
S
122 134Right-handed alpha
Helix 16
16
S
136 144Right-handed alpha
Helix 17
17
S
147 160Right-handed alpha
Helix 18
18
T
15 17Right-handed 310
Helix 19
19
T
27 42Right-handed alpha
Helix 20
20
T
48 60Right-handed alpha
Helix 21
21
T
77 81Right-handed 310
Helix 22
22
T
119 121Right-handed 310
Helix 23
23
T
122 134Right-handed alpha
Helix 24
24
T
136 144Right-handed alpha
Helix 25
25
T
147 161Right-handed alpha
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There are 14 sheets in PDB entry 4M62. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 28anti-parallel
Strand 3
L
62 75anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 97anti-parallel
Strand 4
H
100 103anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 7first strand
Strand 2
M
19 28anti-parallel
Strand 3
M
62 75anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 13first strand
Strand 2
M
102 106parallel
Strand 3
M
84 90anti-parallel
Strand 4
M
33 38anti-parallel
Strand 5
M
45 49anti-parallel
Strand 6
M
53 54anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 13first strand
Strand 2
M
102 106parallel
Strand 3
M
84 90anti-parallel
Strand 4
M
97 98anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 6first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 72anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 97anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
46 51anti-parallel
Strand 6
I
57 59anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 97anti-parallel
Strand 4
I
100 103anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
19 22first strand
Strand 2
S
85 97parallel
Strand 3
S
107 116anti-parallel
Strand 4
S
70 72parallel
Strand 5
S
63 64anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
19 22first strand
Strand 2
T
85 97parallel
Strand 3
T
107 116anti-parallel
Strand 4
T
70 72parallel
Strand 5
T
63 64anti-parallel
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