Analysis of interatomic Contacts of Structural Units in PDB entry:
4M63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M63 entry

There are 3 chains in PDB entry 4M63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 247ALA 474
B
 ARG 247GLN 475
C
 ALA 6GLU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 4M63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
252 257Right-handed alpha
Helix 2
2
A
258 260Right-handed 310
Helix 3
3
A
261 280Right-handed alpha
Helix 4
4
A
283 292Right-handed alpha
Helix 5
5
A
298 302Right-handed 310
Helix 6
6
A
305 316Right-handed alpha
Helix 7
7
A
318 322Right-handed 310
Helix 8
8
A
340 351Right-handed alpha
Helix 9
9
A
370 385Right-handed alpha
Helix 10
10
A
386 396Right-handed alpha
Helix 11
11
A
397 408Right-handed alpha
Helix 12
12
A
409 413Right-handed 310
Helix 13
13
A
414 420Right-handed alpha
Helix 14
14
A
420 434Right-handed alpha
Helix 15
15
A
435 437Right-handed 310
Helix 16
16
A
440 456Right-handed alpha
Helix 17
17
A
461 473Right-handed alpha
Helix 18
18
B
252 257Right-handed alpha
Helix 19
19
B
261 280Right-handed alpha
Helix 20
20
B
283 291Right-handed alpha
Helix 21
21
B
296 301Right-handed alpha
Helix 22
22
B
305 316Right-handed alpha
Helix 23
23
B
318 322Right-handed 310
Helix 24
24
B
340 351Right-handed alpha
Helix 25
25
B
370 383Right-handed alpha
Helix 26
26
B
387 394Right-handed alpha
Helix 27
27
B
397 409Right-handed alpha
Helix 28
28
B
410 413Right-handed 310
Helix 29
29
B
415 420Right-handed alpha
Helix 30
30
B
420 434Right-handed alpha
Helix 31
31
B
440 456Right-handed alpha
Helix 32
32
B
461 473Right-handed alpha
Helix 33
33
C
55 61Right-handed alpha
Helix 34
34
C
78 92Right-handed alpha
Helix 35
35
C
97 101Right-handed 310
Helix 36
36
C
112 126Right-handed alpha
Helix 37
37
C
137 145Right-handed alpha
Helix 38
38
C
181 195Right-handed alpha
Helix 39
39
C
202 217Right-handed alpha
Helix 40
40
C
222 233Right-handed alpha
Helix 41
41
C
252 263Right-handed alpha
Helix 42
42
C
264 267Right-handed 310
Helix 43
43
C
273 284Right-handed alpha
Helix 44
44
C
289 295Right-handed alpha
Helix 45
45
C
301 306Right-handed 310
Helix 46
46
C
308 320Right-handed alpha
Helix 47
47
C
337 347Right-handed alpha
Helix 48
48
C
359 366Right-handed alpha
Helix 49
49
C
369 374Right-handed alpha
Helix 50
50
D
55 61Right-handed alpha
Helix 51
51
D
78 92Right-handed alpha
Helix 52
52
D
97 101Right-handed 310
Helix 53
53
D
112 126Right-handed alpha
Helix 54
54
D
137 145Right-handed alpha
Helix 55
55
D
181 193Right-handed alpha
Helix 56
56
D
194 196Right-handed 310
Helix 57
57
D
202 217Right-handed alpha
Helix 58
58
D
222 233Right-handed alpha
Helix 59
59
D
252 257Right-handed alpha
Helix 60
60
D
258 262Right-handed 310
Helix 61
61
D
263 268Right-handed 310
Helix 62
62
D
273 283Right-handed alpha
Helix 63
63
D
289 295Right-handed alpha
Helix 64
64
D
301 305Right-handed 310
Helix 65
65
D
309 319Right-handed alpha
Helix 66
66
D
337 349Right-handed alpha
Helix 67
67
D
350 353Right-handed 310
Helix 68
68
D
359 366Right-handed alpha
Helix 69
69
D
369 374Right-handed alpha
Helix 70
70
E
56 61Right-handed alpha
Helix 71
71
E
71 75Right-handed 310
Helix 72
72
E
78 92Right-handed alpha
Helix 73
73
E
112 126Right-handed alpha
Helix 74
74
E
137 145Right-handed alpha
Helix 75
75
E
172 175Right-handed 310
Helix 76
76
E
181 193Right-handed alpha
Helix 77
77
E
205 217Right-handed alpha
Helix 78
78
E
222 231Right-handed alpha
Helix 79
79
E
252 257Right-handed alpha
Helix 80
80
E
258 262Right-handed 310
Helix 81
81
E
263 268Right-handed 310
Helix 82
82
E
273 284Right-handed alpha
Helix 83
83
E
286 295Right-handed alpha
Helix 84
84
E
301 305Right-handed 310
Helix 85
85
E
308 321Right-handed alpha
Helix 86
86
E
337 347Right-handed alpha
Helix 87
87
E
359 366Right-handed alpha
Helix 88
88
E
369 374Right-handed alpha
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There are 18 sheets in PDB entry 4M63. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
D
238 241parallel
Strand 3
D
247 250anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
365 369anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 328first strand
Strand 2
E
238 241parallel
Strand 3
E
247 250anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
365 369anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
17 21anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
65 68anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
149 155anti-parallel
Strand 4
C
297 300parallel
Strand 5
C
329 330parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 241first strand
Strand 2
C
247 248anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 32first strand
Strand 2
D
16 21anti-parallel
Strand 3
D
8 12anti-parallel
Strand 4
D
103 107parallel
Strand 5
D
131 136parallel
Strand 6
D
357 358anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
35 37anti-parallel
Strand 3
D
66 68anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
75 76anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
176 178anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
297 300parallel
Strand 5
D
329 330parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 32first strand
Strand 2
E
16 21anti-parallel
Strand 3
E
8 11anti-parallel
Strand 4
E
103 107parallel
Strand 5
E
131 136parallel
Strand 6
E
357 358anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 170first strand
Strand 2
E
160 166anti-parallel
Strand 3
E
176 178anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 170first strand
Strand 2
E
160 166anti-parallel
Strand 3
E
150 155anti-parallel
Strand 4
E
297 300parallel
Strand 5
E
329 330parallel
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