Analysis of interatomic Contacts of Structural Units in PDB entry:
4M69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M69 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4M69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ASP 183
A
 GLY 185LYS 230
A
 LEU 233GLN 312
B
 GLN 182GLU 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4M69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
59 64Right-handed alpha
Helix 3
3
A
65 68Right-handed 310
Helix 4
4
A
102 107Right-handed 310
Helix 5
5
A
114 135Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
163 168Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
192 198Right-handed alpha
Helix 10
10
A
204 222Right-handed alpha
Helix 11
11
A
230 238Right-handed alpha
Helix 12
12
A
246 250Right-handed 310
Helix 13
13
A
259 271Right-handed alpha
Helix 14
14
A
274 278Right-handed 310
Helix 15
15
A
280 295Right-handed alpha
Helix 16
16
A
298 311Right-handed alpha
Helix 17
17
B
187 191Right-handed 310
Helix 18
18
B
228 246Right-handed alpha
Helix 19
19
B
279 287Right-handed alpha
Helix 20
20
B
291 312Right-handed alpha
Helix 21
21
B
336 342Right-handed alpha
Helix 22
22
B
359 364Right-handed 310
Helix 23
23
B
365 371Right-handed alpha
Helix 24
24
B
377 395Right-handed alpha
Helix 25
25
B
403 413Right-handed alpha
Helix 26
26
B
425 436Right-handed alpha
Helix 27
27
B
439 443Right-handed 310
Helix 28
28
B
445 456Right-handed alpha
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There are 5 sheets in PDB entry 4M69. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 30first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
92 96anti-parallel
Strand 5
A
78 79anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
88 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
157 159anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
204 211anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
267 273anti-parallel
Strand 5
B
254 260anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
331 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il