Analysis of interatomic Contacts of Structural Units in PDB entry:
4M6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M6A entry

There are 10 chains in PDB entry 4M6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2THR 90
B
 LEU 2GLY 92
C
 MET 1THR 90
D
 LEU 2THR 90
E
 LEU 2THR 90
F
 LEU 2THR 90
G
 LEU 2THR 90
H
 LEU 2THR 90
I
 LEU 2THR 90
J
 LEU 2GLY 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4M6A

There are 17 sheets in PDB entry 4M6A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
17 23anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
C
84 89anti-parallel
Strand 5
C
67 76anti-parallel
Strand 6
C
31 38anti-parallel
Strand 7
C
46 51anti-parallel
Strand 8
D
46 51anti-parallel
Strand 9
D
31 38anti-parallel
Strand 10
D
67 76anti-parallel
Strand 11
D
79 80anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 80first strand
Strand 2
C
67 76anti-parallel
Strand 3
C
31 38anti-parallel
Strand 4
C
46 51anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
31 38anti-parallel
Strand 7
D
67 76anti-parallel
Strand 8
D
84 89anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
17 23anti-parallel
Strand 3
B
6 13anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
67 76anti-parallel
Strand 3
A
31 38anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
31 38anti-parallel
Strand 7
B
67 76anti-parallel
Strand 8
B
79 80anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
67 76anti-parallel
Strand 3
A
31 38anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
31 38anti-parallel
Strand 7
B
67 76anti-parallel
Strand 8
B
84 89anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 12first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
56 59anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
17 23anti-parallel
Strand 3
D
6 13anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
F
17 23anti-parallel
Strand 3
F
58 60anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 59first strand
Strand 2
E
17 23anti-parallel
Strand 3
F
6 13anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
84 89first strand
Strand 2
E
67 75anti-parallel
Strand 3
E
31 38anti-parallel
Strand 4
E
46 51anti-parallel
Strand 5
F
46 51anti-parallel
Strand 6
F
31 38anti-parallel
Strand 7
F
67 72anti-parallel
Strand 8
F
84 89anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 76first strand
Strand 2
F
79 80anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
56 59first strand
Strand 2
G
6 23anti-parallel
Strand 3
H
6 23anti-parallel
Strand 4
H
56 59anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
84 89first strand
Strand 2
G
67 75anti-parallel
Strand 3
G
31 38anti-parallel
Strand 4
G
46 51anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
31 38anti-parallel
Strand 7
H
68 76anti-parallel
Strand 8
H
79 80anti-parallel
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There are 11 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
84 89first strand
Strand 2
G
67 75anti-parallel
Strand 3
G
31 38anti-parallel
Strand 4
G
46 51anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
31 38anti-parallel
Strand 7
H
68 76anti-parallel
Strand 8
H
84 87anti-parallel
Strand 9
J
6 12anti-parallel
Strand 10
I
18 23anti-parallel
Strand 11
I
56 59anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 12first strand
Strand 2
J
18 23anti-parallel
Strand 3
J
56 59anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
79 80first strand
Strand 2
I
67 76anti-parallel
Strand 3
I
84 89anti-parallel
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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
79 80first strand
Strand 2
I
67 76anti-parallel
Strand 3
I
31 38anti-parallel
Strand 4
I
46 51anti-parallel
Strand 5
J
46 51anti-parallel
Strand 6
J
31 38anti-parallel
Strand 7
J
67 75anti-parallel
Strand 8
J
84 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il