Analysis of interatomic Contacts of Structural Units in PDB entry:
4M6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M6B entry

There are 4 chains in PDB entry 4M6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37GLY 221
C
 SER 598SER 628
D
 ARG 36GLY 222
F
 SER 598SER 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4M6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 52Right-handed alpha
Helix 2
2
A
58 87Right-handed alpha
Helix 3
3
A
93 105Right-handed alpha
Helix 4
4
A
106 127Right-handed alpha
Helix 5
5
A
132 138Right-handed alpha
Helix 6
6
A
142 153Right-handed alpha
Helix 7
7
A
161 190Right-handed alpha
Helix 8
8
A
196 206Right-handed alpha
Helix 9
9
A
207 221Right-handed alpha
Helix 10
10
C
600 605Right-handed 310
Helix 11
11
D
40 52Right-handed alpha
Helix 12
12
D
58 87Right-handed alpha
Helix 13
13
D
93 105Right-handed alpha
Helix 14
14
D
106 127Right-handed alpha
Helix 15
15
D
132 138Right-handed alpha
Helix 16
16
D
142 152Right-handed alpha
Helix 17
17
D
161 190Right-handed alpha
Helix 18
18
D
196 206Right-handed alpha
Helix 19
19
D
207 221Right-handed alpha
Helix 20
20
F
600 605Right-handed 310
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There are 4 sheets in PDB entry 4M6B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
194 195parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
159 160parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
194 195parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 92first strand
Strand 2
D
159 160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il