Analysis of interatomic Contacts of Structural Units in PDB entry:
4M6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M6D entry

There are 11 chains in PDB entry 4M6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 129
B
 G 10 C 50
C
 LYS 1LEU 129
D
 G 9 C 50
E
 LYS 1LEU 129
F
 G 10 C 50
G
 LYS 1LEU 129
H
 G 9 C 50
I
 LYS 1LEU 129
J
 G 10 C 50
K
 LYS 1THR 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 4M6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 14Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
25 37Right-handed alpha
Helix 4
4
A
79 84Right-handed 310
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
108 115Right-handed alpha
Helix 7
7
C
4 15Right-handed alpha
Helix 8
8
C
19 23Right-handed 310
Helix 9
9
C
24 37Right-handed alpha
Helix 10
10
C
55 57Right-handed 310
Helix 11
11
C
79 85Right-handed 310
Helix 12
12
C
88 100Right-handed alpha
Helix 13
13
C
103 107Right-handed 310
Helix 14
14
C
108 115Right-handed alpha
Helix 15
15
E
4 15Right-handed alpha
Helix 16
16
E
19 23Right-handed 310
Helix 17
17
E
24 37Right-handed alpha
Helix 18
18
E
79 85Right-handed 310
Helix 19
19
E
88 102Right-handed alpha
Helix 20
20
E
104 107Right-handed 310
Helix 21
21
E
108 115Right-handed alpha
Helix 22
22
E
119 125Right-handed 310
Helix 23
23
G
4 15Right-handed alpha
Helix 24
24
G
24 37Right-handed alpha
Helix 25
25
G
79 85Right-handed 310
Helix 26
26
G
88 102Right-handed alpha
Helix 27
27
G
108 116Right-handed alpha
Helix 28
28
I
4 15Right-handed alpha
Helix 29
29
I
19 23Right-handed 310
Helix 30
30
I
24 37Right-handed alpha
Helix 31
31
I
55 57Right-handed 310
Helix 32
32
I
79 85Right-handed 310
Helix 33
33
I
88 100Right-handed alpha
Helix 34
34
I
103 108Right-handed 310
Helix 35
35
I
110 115Right-handed alpha
Helix 36
36
I
121 125Right-handed 310
Helix 37
37
K
4 16Right-handed alpha
Helix 38
38
K
19 23Right-handed 310
Helix 39
39
K
24 37Right-handed alpha
Helix 40
40
K
79 85Right-handed 310
Helix 41
41
K
88 100Right-handed alpha
Helix 42
42
K
103 107Right-handed 310
Helix 43
43
K
108 114Right-handed alpha
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There are 6 sheets in PDB entry 4M6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
58 59anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 45first strand
Strand 2
C
51 53anti-parallel
Strand 3
C
58 59anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 45first strand
Strand 2
E
51 53anti-parallel
Strand 3
E
58 59anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
43 45first strand
Strand 2
G
51 53anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 45first strand
Strand 2
I
51 53anti-parallel
Strand 3
I
58 59anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
43 45first strand
Strand 2
K
51 53anti-parallel
Strand 3
K
58 59anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il