Analysis of interatomic Contacts of Structural Units in PDB entry:
4M7A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4M7A entry

There are 16 chains in PDB entry 4M7A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ILE 67
B	MET 1	VAL 90
C	THR 3	PRO 79
D	VAL 11	GLN 84
E	PRO 4	GLY 84
F	ALA 26	ALA 105
G	MET 1	LYS 90
H	THR 4	ILE 67
I	MET 1	MET 91
J	THR 3	PRO 79
K	VAL 11	GLN 84
L	ILE 6	GLY 84
M	ILE 27	ALA 105
N	MET 1	ASP 83
O	G 108	U 112
P	G 108	U 112

There are 17 helices in PDB entry 4M7A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	9	Right-handed 310
Helix 2	2	B	2	9	Right-handed alpha
Helix 3	3	B	73	77	Right-handed 310
Helix 4	4	B	78	89	Right-handed alpha
Helix 5	5	C	8	12	Right-handed 310
Helix 6	6	D	12	19	Right-handed alpha
Helix 7	7	E	7	15	Right-handed alpha
Helix 8	8	G	2	10	Right-handed alpha
Helix 9	9	G	84	90	Right-handed alpha
Helix 10	10	I	2	9	Right-handed alpha
Helix 11	11	I	73	77	Right-handed 310
Helix 12	12	I	78	89	Right-handed alpha
Helix 13	13	J	4	10	Right-handed alpha
Helix 14	14	K	12	19	Right-handed alpha
Helix 15	15	L	7	15	Right-handed alpha
Helix 16	16	M	29	34	Right-handed 310
Helix 17	17	N	4	9	Right-handed alpha

There are 8 sheets in PDB entry 4M7A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 36 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	81	first strand
Strand 2	A	48	56	anti-parallel
Strand 3	A	36	43	anti-parallel
Strand 4	A	22	30	anti-parallel
Strand 5	A	12	17	anti-parallel
Strand 6	A	61	66	anti-parallel
Strand 7	B	59	62	anti-parallel
Strand 8	B	38	44	anti-parallel
Strand 9	B	23	32	anti-parallel
Strand 10	B	14	19	anti-parallel
Strand 11	B	67	72	anti-parallel
Strand 12	C	55	68	anti-parallel
Strand 13	C	39	52	anti-parallel
Strand 14	C	24	33	anti-parallel
Strand 15	C	15	20	anti-parallel
Strand 16	C	73	77	anti-parallel
Strand 17	D	71	73	anti-parallel
Strand 18	D	47	56	anti-parallel
Strand 19	D	32	41	anti-parallel
Strand 20	D	23	28	anti-parallel
Strand 21	D	78	83	anti-parallel
Strand 22	E	70	73	anti-parallel
Strand 23	E	43	52	anti-parallel
Strand 24	E	28	37	anti-parallel
Strand 25	E	19	24	anti-parallel
Strand 26	E	78	83	anti-parallel
Strand 27	F	92	94	anti-parallel
Strand 28	F	61	69	anti-parallel
Strand 29	F	46	55	anti-parallel
Strand 30	F	37	42	anti-parallel
Strand 31	F	99	104	anti-parallel
Strand 32	G	65	71	anti-parallel
Strand 33	G	38	46	anti-parallel
Strand 34	G	24	32	anti-parallel
Strand 35	G	14	19	anti-parallel
Strand 36	G	76	81	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	56	first strand
Strand 2	D	65	67	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	52	first strand
Strand 2	E	62	66	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	69	first strand
Strand 2	F	87	88	anti-parallel

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There are 38 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	87	88	first strand
Strand 2	M	67	69	anti-parallel
Strand 3	M	47	51	anti-parallel
Strand 4	M	37	42	anti-parallel
Strand 5	M	99	102	anti-parallel
Strand 6	N	65	71	anti-parallel
Strand 7	N	38	45	anti-parallel
Strand 8	N	24	32	anti-parallel
Strand 9	N	14	19	anti-parallel
Strand 10	N	76	80	anti-parallel
Strand 11	H	54	56	anti-parallel
Strand 12	H	36	42	anti-parallel
Strand 13	H	22	30	anti-parallel
Strand 14	H	12	17	anti-parallel
Strand 15	H	61	66	anti-parallel
Strand 16	I	59	62	anti-parallel
Strand 17	I	38	44	anti-parallel
Strand 18	I	24	32	anti-parallel
Strand 19	I	13	19	anti-parallel
Strand 20	I	67	72	anti-parallel
Strand 21	J	55	68	anti-parallel
Strand 22	J	39	52	anti-parallel
Strand 23	J	24	33	anti-parallel
Strand 24	J	15	20	anti-parallel
Strand 25	J	73	77	anti-parallel
Strand 26	K	71	73	anti-parallel
Strand 27	K	47	56	anti-parallel
Strand 28	K	32	41	anti-parallel
Strand 29	K	23	28	anti-parallel
Strand 30	K	78	83	anti-parallel
Strand 31	L	70	73	anti-parallel
Strand 32	L	43	52	anti-parallel
Strand 33	L	28	37	anti-parallel
Strand 34	L	19	24	anti-parallel
Strand 35	L	78	83	anti-parallel
Strand 36	M	92	94	anti-parallel
Strand 37	M	61	63	anti-parallel
Strand 38	M	54	55	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	42	first strand
Strand 2	H	49	51	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	47	56	first strand
Strand 2	K	63	66	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	52	first strand
Strand 2	L	62	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4M7A

Analysis of interatomic Contacts of Structural Units in PDB entry:
4M7A