Analysis of interatomic Contacts of Structural Units in PDB entry:
4M7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M7Y entry

There are 2 chains in PDB entry 4M7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 266
B
 MET 1GLU 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4M7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 40Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
69 85Right-handed alpha
Helix 4
4
A
120 133Right-handed alpha
Helix 5
5
A
136 145Right-handed alpha
Helix 6
6
A
156 160Right-handed alpha
Helix 7
7
A
178 182Right-handed 310
Helix 8
8
A
188 216Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
230 244Right-handed alpha
Helix 11
11
A
253 255Right-handed 310
Helix 12
12
A
256 266Right-handed alpha
Helix 13
13
B
31 42Right-handed alpha
Helix 14
14
B
53 61Right-handed alpha
Helix 15
15
B
69 85Right-handed alpha
Helix 16
16
B
120 133Right-handed alpha
Helix 17
17
B
136 145Right-handed alpha
Helix 18
18
B
156 160Right-handed alpha
Helix 19
19
B
178 182Right-handed 310
Helix 20
20
B
188 215Right-handed alpha
Helix 21
21
B
224 228Right-handed 310
Helix 22
22
B
230 244Right-handed alpha
Helix 23
23
B
253 255Right-handed 310
Helix 24
24
B
256 266Right-handed alpha
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There are 6 sheets in PDB entry 4M7Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
46 50parallel
Strand 5
A
66 67parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
101 106anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
219 223parallel
Strand 5
A
247 250parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
172 174anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 28first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
2 7anti-parallel
Strand 4
B
46 50parallel
Strand 5
B
66 67parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
101 106anti-parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
219 223parallel
Strand 5
B
247 250parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
172 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il